G103354 (qki,LOC106922399,LOC103458862,LOC103144233,LOC107094928,LOC101469882,LOC107721620,LOC106947196,LOC107590898,LOC107697705)


Basic Information

Item Value
gene id G103354
gene name qki,LOC106922399,LOC103458862,LOC103144233,LOC107094928,LOC101469882,LOC107721620,LOC106947196,LOC107590898,LOC107697705
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5617058 ~ 5652821 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129124
acttagTTAGGTTAATCATGACAATTACATCATGATTGTGAACAACCACCCCCCACCTGAGCAATCAAATTATTGTCATTAGAGCAGAGAGCTTAGGAGGTACCCCAATACCACAACAGAAGCAAAGAGTccacaaattaatgttttagttCTTCACATCGAGTGGAAATGCAGTTACGTACAGTAGGATTAGTGTTAAGAGATGCCCAATAGTGTCAATTAGGCAAGGAAAGGCTGAATCTCGTTTCAGATTTGCGCTCCTCTTTATTTACCAGTATATACAGGTGCTATAAATACAGGATCGTTTTGCATAAAATGTTCATGTATAAAATTACAGTACCTCTCATTACAATTGAAACacgatataaaaaaaatgtgatagttgatctatatatttatgcatcTCTAAATTTTGTTCCTCGTTTACAATAAACTAAAGGAATGATAAACTGTAAACTACCTGATGCAattcagtaaacaaaacaaaccaaagactAGGACACTTGGATAGAGTACATGCATGGTGGTCTAATACCAAGTAAAGTTCTTTGCAAATTGAAATTACAGTTCACTATCAAAAGCAAGGAATTCTCAATCCAGCTCCTCCCATTATCTTTCAAGGCCTTATTTTTTCTAACTTTGAACAGGACAGTGCTACAGTCATTTAATAACCCCTCCGCCCAATTCCAACTTCatgagagaggaagaaaaaatgaaaaacaaaacctccactaaaaaaaaaaaaaaagattcttcTATTGAGAAGTTCACAGTTTTTACAGTCTTCGagtggaaaaaataagttttggAAGGAATTGTAAATActaaaaactaaagcaaaaaaacatttgtactaGCTGAATGATGCTTGAGAATTTCACAAAGTGTAAAACTACTTCTGACTTAGTTCATTCTTGTATTGCAAAGGAAAAAGGCTGGTAGTGTTTCTGATTTAATGGGATTTCTGCAGACCTATTAGGTGACTGTTTTCCTCCCGAAGGTTATTCTCTTCCTCGGGAGGTGTGACCTATTCAGGCATAATGTGAACCCCACACCCCAAAAATATGCTTAGCAGAAACAATGGAAAATCACCATCAAAACCttgttacaaagaaaaaaaaactaatgtaaactctgaaatcatgttttattttagacaaACCTGAGCATTTCTAgctagatatatatagatatattccAGTTTCTTGTAAACAAAATTGCATACCACAGATTAAGACATTGAGGTGGGGAAAACCTAAACCTGAAAGAATAaaaggggaataaaataaaaacatcttaacGACTAAACTGACCTCTTTCAGCAGTCACAATCCTTTGGTAAGGATGTACGCGACTGTCATGTCTCCGGACTTTAGTTGCCATTGCTCCTAGATTGTAATAGGTCCACAGTATTAGAAagtaatttggaaaaaaaaacaaaaaacattataatatttacacatacattggcatatacaaaataacttatatatttcttatattaCAGACGTTtcacatataaaacacaaaacaaaacgtgTCACAGCTGTGTTCAGAGTTGATCCGTTTTGGTGATTTCGAGAGGAAAGCAGCTCGTCTATTTCTCAGTTTCCCAAGCAGGACTTACTGGAGGTGGGATGAGGCATGTTTTTAATcaactttcaaaaataaattaaaaagaaatcgAACACCGGTCACTGCAGGGAGACGGGCGCTTTTCACACGAaggaacagaaacacaaaatcgCCCAAAACAAATCCACTCCACAGCACCACAGGATTTAGACCTCAGTGGCATCCTCAAACACTGGAGGTTGCTACAAAAAAAGGCTTTTGATTCAGTTCCTCTGCTGGTGATAATGGTGGAATATATAGTCAAAACCAGTTGATATCACTCCTGTCAAAGTCACAATCTGCTTATTTCCATCAAGCGGGATTGTGCTGGTCCAAATATCATGCAAGGCAATGGGAAAACTCCCTATATGACTTGCCATAATGTGGTTAATATAAAATTTGTTTCAAGTGATCCCAAGTGGAATTCTCTTATCTGTGAATACTTCAGCCCATTTGGcctacctttttattttttacatcgTTATAATTTACTTCTGATTTACTCTGCTTATTGTTAGTGTTCTATAAGTCCCAGTAAAGTGATAGTAAAAGGTTTTGACTTTAGATATATTTAATCCTTTGAGATCTCTCTTTTATAAAACTTCTTTAAACATTCTCTGCATTTCatgtgggaaaaacaaaaataaatcggACACTCGTTTCCGATCCTCTCTGGGATTTCTATGCAGCTGGTTAACACTTTTAGACAAAGCGAGTTCTGCCAAGCATTGATTTTGAGAACAAAATCAGAAGTCAAAAACTGGTTCAACTCCCAGTTCAGCTGCCTGTTAAGAGCAAaaactttagttttttcttagCAAAATATGTGGGAGTGTCTTTGTGGAAAATGCCATAGAAGAATATTCAAAACAATGACTTAATGTTGGTGTAAAGGAAAACTATCTCCAGGGTGAGCAGGAAATTACATGTTTACTTGTTGGCATGAACAGGCCAGACATGCTCATGTACCGGCAGCTGTCCTGCAGTGAGCGAGGCCCACCCTAACAGAGGGCACAAAGGAGCCCGCAGCGATTCTGGTGAAAAGGGTTTAGAAACCCCAAAGACTTCAAAAAGTCAGCGTCTCGGGCTCAGCTGTACTCAGTTTGGCAGAACTCCTGTCAGTCTCCTCATTTCTCAAATCGCTCACAGCGTCTGAACTTTTTACGGGGCCTTATCAGGTTCCAAGCCATACTCTCCAACATCCATGCCTTGCCAACTACATTTTTTGCATCTTTTTCGATGCTAAAAGCGAGCAGACACGGCTTCTTTTGGACATCGCCGTCACTGGCTAGTGTCCTAGAGATGCACTTTTTCCACTCCGTCATCGCTAATCTAAACCAGGTCCCAGCTGTGTCAAGTTGTAAAGGGACCTGTTATATTGTCACTACGGCTACTTCTTTTTTGTCCTCTATATTTTTCAGCAGCAGCATTTTCACCACAGTGCCAGGAGACTGGAAAGCAGTCAAAGGGAATGTGTGAAGGTATCAACCCTAGGGTACCCAATGGTCAGGTGGCGGTAGTGCGTCTGTAAATCTAATCTCTGGAACTGCCTGCTACATTATGAGGATCCGAGTCTGTGCTGCTTCAAACCCCACTATAACCCACGGTCACCCAGACTGCCTTCCACACCGCCTCCCCTCTCCTCAGTGACTGAACAGAAAACAGGGAGCCAAAAAGGGGACGAGGCTGACAGACATTTAAAAGCTGCAagtctgaaatgtatattattcaaATGCGTCCCATTAAGTGGCCCATGCTGAGCTTTTACTTAAGTGAcggtgatttttttattttggtttgcaaACGGTCTCCAATTAGTCCACCCTGTTGGTTTTGCAAAAGGGTGCATTAAAATTTGTAAACTAGTGAATAAGTGATAAGCTGACTGTGGCTGCTCACGTCTCCAGCCAACATGGTGCCATCAGGGCAGCCTTGGAAAAGTgtttataaaaagtaaaaaaacaaaactccacAAGACTCTTCGAGTTGAAAAATGAACGTATGTATAAGGAATGTTTATTCTCTGCTCTAACAGTGGAACTGAACCTGCAGAGAGTACTTTAAGTTCAACTGTTCAAATGTTGCCCAAAACACTAACAGGGCTCCAGTGACAAAACCGGAAGGTGCTGATTAACAGCATCCAGAaagtgaaatacagaaaaaaataagttgttttcaAAGGGTACACCTTTTTATTTGATCTAAGTTGCATTTAACGCAATATGAAGAGTTCTATAACTGTGTATCgagtgtggggtgggggggcaatgtcggtttttcttttcttttctttttttaatagagTTCTGTAGATGTGACTGAATTAATGACTGAggctttgtgttgtttcattGGCTGGTAATGAGCTACAGTTACCACACAGTTACCACAGTGCACAACACATTGACAGCACAGCCCAAGCACCGCTAATGAGGAGTGTGAGAATCGGGTCTGACCAGGGGCTGTCTCACCACATCCttaaacagaatacataaaataataaataaaaaataaactcactGCAGTTCTCTTTCAAGTAGCTTCTGTTCAAACAGGCGAAAGCCAAAATAAGAAACTAAACTTAAATGAGTAACGGAGCTTCAACCACAAGGCCTTTACTGGAATCAGAACTGGCTAAGGAGGTGAGGGAAGAGATCAAGTTAGAGGCACAAAGTCTGTGGAGATCTGTTACGAGACCGAGTGtggcaattaaattaaagctgtGCGCGCACTTGGGGAAGGAGGAGGCAGAAGCAGGAGGCAGTCTTTAAACACAGGCTTTCATAGGTGAAGGTCTGTCGTTTCCCACAGGGCAATGAACGGCTGCTGGAATGTGGGAGAAAATGGCCAAAGAACAATGGaacgaaacaaaaacaaaaacattgcataCAGAATTTAGAGACACACGTCTGACCCACGCAAGGAGGTCAGACGGGGGAGGGGTTCCCCGCACAACAACCCTCAGCTCGAAACGATGTATTTACCTTTTAGCAAATCCTGCCCATGGCTCGAGGAGGTGTCCAAAACGCCACTGTACAACAAGCTGCCATCCTGTCCAGGGTTAATGACCGTCCCAAAGCCCCACGGACGCTTACCTAGAACGCCACTGTGGTCGATAGGGTACTCCAGCAGAGAGGTGGGGGCCAGGGCATACGGGTAATCGTAGGGTGTTGTGTAGATAATGCCACCATCGGGCGAGGGGGGCACTAAGGTTGGCGTTCCATTTGGCATCATCGTGGCCGTTTGGATGGGCcggatgatgttcatgatgggGGTCCCTGGTGTGGGGGGTCTCATGGCTTGGGGGGGCAAAACTTGACCATTGGGTGCAGCTATGAGCCTGGGGCCCTGCGCTGCCGCAGCAGCCGGTGTCTTGATGTTGGTGTCTCTGTATGTACCATTGAGAATTGCCAGCTCCATCAGCTGCATCTTCTTCAGGTTGTCTTCTCCCTCAGCCGCGGGCACTAGAAGCTTCTTGACCTCTTCCACTGCTCTTCTCATCTTGATCTCTGCTCTGGTCTGTGTGTCTTCCACCGTGATCAGAACGTgcaaatcctcatttaaatgctcCCAGTTGGGCTTGCCCCGGTTCTGTTCTTCCTTCTTCCTGTCCCTCATTGAGCTCTTTCCCCGGACCATGATTTTGCATCCAGTTTCTGCTTCCAGCTGTTTGGCAGTCAGTCCTCGTGGGCCCAGAATCCTCCCAACAAAGTT
>TU129125
CCTGTTAATTTTTCACAAAAGGCAAATGTATCAGTGTTGAAAAACActtgcatacattttgttttaaacatgaaatgGTAGTAATTTTTACAGACTCCTTCTTATTTGAAGTCTgtgtaattaatataaacacaatagcTCAATGCTGAGCTTTTGATCCAGTGTCAAAATGTATGTTAAGCATTAAAACCAGTGTTTGTCTTCACGCTAAATAAGATCATGCTGGAAGCCATCAGCAATCTTCagtgtacatatttatacatttcaacacAACCAAACAGCCTTGCCATGTTTAAAAAAGCACTTCCAAAAACAATGGCGGAATACCCAGTTTTGCCTGGCTGTGGTTTAAATAGCATTAAGTGCTTTGTGGAGTTTCACAATGGTATCTCATGTCAAGGCAGCTTGTCTGAATTATGGCTGGGCTTtttggggagagaaaaaaaaatgcttctaGAGATGGGCTTGGATGCTTCTGAGAGAAAGACCACTTCTGAGGATGCTGGGGAATGCTGAGGTTTGACAGATTAGGGTTAAGTGTTGACTAGCCGTGTGCTTACATGACCATTGGGAAAAATCCCAATTGATAATGATATTTGGAAAACCAACTACATTAACTCTTCCAAAAACTTCACACTGTACTTGATTTCTACTCAGCCTACTACTGCCTGTGTGTGCCTAGCCCAGGGGAGTCTTTTTCCGAAGCGTGCGTGTTGCTGTTGGGGTGGGggactgaaaaaatattttgcttggTCAAgttgatttagaaatatataaatacatagaatGCATGGAAATAAGTACACCATTTCTGCGTTTGCCAGACGAAGATGAATCCACACAGTGAACTGGTGCACAAACAGAAGAGtgttggtttcagttttttaaacacattaaagcTTCCAAAAAAATATACTCATGTCAACACCATGCATGTTACAAGGCCTGTGTAGTTTGTTTTCTCACACAGGGCTCCATGCCTGACTAACAGCTTGTCTGGGTCTCAAATACAAAAGGAGAGGACATGGGGGGCAGCTTACGTGTCTTGATGTTGGTGTCTCTGTATGTACCATTGAGAATTGCCAGCTCCATCAGCTGCATCTTCTTCAGGTTGTCTTCTCCCTCAGCCGCGGGCACTAGAAGCTTCTTGACCTCTTCCACTGCTCTTCTCATCTTGATCTCTGCTCTGGTCTGTGTGTCTTCCACCGTGATCAGAACGTgcaaatcctcatttaaatgctcCCAGTTGGGCTTGCCCCGGTTCTGTTCTTCCtgtagcaaaacaaagaaaaacaacgtTAACGTTCAAATGAAAGCCTGTGCGTCAAACTGAAGTGTGAAAACTGGCCATGGGAGAACTATTCCCACCACCCCCATGCTGTCAACCATGTACCCAAGTGCATTGTTCTTTAATTGTGGCTTTTCAAAGCAAAAGGGTCCATTTAACAATACATTCAGTCGGCAGGAGATGGTTTCATATTAACAACA

Function

symbol description
qki Enables RNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within several processes, including long-chain fatty acid biosynthetic process; positive regulation of macromolecule metabolic process; and vasculogenesis. Predicted to be part of cytoplasm. Predicted to be active in nucleus and synapse.

NR:

description
protein quaking-A isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129124 True 5328 lncRNA 0.42 5 5617058 5652821
TU129125 False 1488 lncRNA 0.41 2 5623758 5645621

Neighbor

gene id symbol gene type direction distance location
AMCG00010957 NA coding upstream 15845 5599919 ~ 5601213 (+)
AMCG00010956 NA coding upstream 17190 5593933 ~ 5599868 (+)
AMCG00010951 NA coding upstream 105376 5504377 ~ 5511682 (+)
AMCG00010942 NA coding upstream 332760 5283816 ~ 5284298 (+)
AMCG00010943 rps6ka1,LOC107654838,LOC107721568,LOC107711701,LOC107697698 coding upstream 342926 5255095 ~ 5274132 (+)
AMCG00010962 NA coding downstream 281277 5934098 ~ 5939360 (+)
AMCG00010963 NA coding downstream 297605 5950426 ~ 5959972 (+)
AMCG00010967 NA coding downstream 324259 5977080 ~ 5977815 (+)
AMCG00010964 NA coding downstream 325029 5977850 ~ 5987680 (+)
AMCG00010969 kdm1a coding downstream 382670 6035491 ~ 6051667 (+)
G103348 NA non-coding upstream 3624 5550058 ~ 5613434 (+)
G103333 NA non-coding upstream 156485 5456358 ~ 5460573 (+)
G103316 id3,LOC102304963,LOC106610662,LOC101474249,LOC100706678 non-coding upstream 261394 5353769 ~ 5355664 (+)
G103258 NA non-coding upstream 476337 5134227 ~ 5140721 (+)
G103152 NA non-coding upstream 997402 4536337 ~ 4619656 (+)
G103360 LOC101158568,LOC103376478,LOC107695181,LOC102780806 non-coding downstream 16304 5669125 ~ 5694122 (+)
G103413 NA non-coding downstream 310268 5963089 ~ 5965939 (+)
G103416 NA non-coding downstream 314696 5967517 ~ 5990587 (+)
G103431 NA non-coding downstream 374139 6026960 ~ 6029057 (+)
G103459 NA non-coding downstream 500172 6152993 ~ 6153266 (+)
AMCG00010922 NA other upstream 974655 4634472 ~ 4642403 (+)
G103078 NA other upstream 1533472 4049938 ~ 4083586 (+)
G103030 NA other upstream 2036781 3577235 ~ 3580277 (+)
G102947 NA other upstream 2173524 3436618 ~ 3443534 (+)
AMCG00010888 NA other upstream 2188629 3421082 ~ 3428429 (+)
AMCG00010979 NA other downstream 734215 6387036 ~ 6395484 (+)
G103542 NA other downstream 989162 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 1239576 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 1418612 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 2895542 8548363 ~ 8552605 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location