G103939 (yars,LOC107724337,LOC107687080,LOC107709269)


Basic Information

Item Value
gene id G103939
gene name yars,LOC107724337,LOC107687080,LOC107709269
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8548363 ~ 8552605 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129898
CTGGgttgaaattacatttattaattttgtacatGCTTTAAAGGAGAACAATTCCAGACGGAAGGATATATTTTCTACTGTTGAAACCATTTTGATTAATAGTAGGGGACCGGATTCCCCACACAGTACTGTTGATCAACATTGCAAGAACAAAGAATTCACCAGAGCCTTATTAAAGTATACCATGACAGTACAGACTGTCTTGCttattgacttatttttttaaacaatgcttaCATTCTTTCCAATAACAAGAATATAATACCTTGTTCAAGCTTTAGAAATACCCCCCCTGCAGACAGATTGAGTGCTGAATCATCAATTACTCTTATGAAACAAACCCTGTACACATTACCTGTGTTGTGTGAGGCTAAATGTGTCCCTGCAGGCTGTGGGCGGGTTTGTTCTACAGTTAGTGATCAGCGGTAGTGGCTGTACTTGCAGGAATGATTGACAGCTGTGGACGGTGTTTAGCTGATGTTACCCCCCTTCAGTGTTTTACAGCTGATCTGCCCCAGTTTGGTCATCAGGTTATTCTCCTTCCACTGAGCCACACAGGCCTCTGAAATCTTCAAGTCCACCTGCAGCTTCTCGAACACTTTTTTCTTTGGCTTCAGCTCACTGTCTGCCTTGCCGGCCTCGTATCCCTCCACAAACACCCGGTCCCCCGGCGCCGAGCCCTCGGGGGGGTCCAGGGGCTCCACTCTCCGACTCTCCCCATCACTGTGCCCAGAATTCACAAGAGGGGAAAACCATCAGGTGTCCACTTTACAACCCCTTCTCTGCTGTTATGACTCATCTACAGGTTTTGACCTGCTGGGTTTGTCATAACAGCATTCACAGTAGGCAGCATGTGGGGGGTGTTACTCACATGGACGCACAGAGCAGCATAGCCTGGGACTCCACACCCCTCATCTTCTGGGGCTTCAGGTTGCAGAGCAGCACCACCAGTCGGTCCTGCAGCTGCTCAGCGGGCAAGTAGGCCACCAGCCCACTCACCACGGTGCGCGGCGCCTCCTCGCCCACATCGATCTGCTCCACATACAGGCTCTCCGCATCGGGGTGCTGGCGGTGTTGGGGACGCAGGCCACACAGATGTCAGAAATAGACTCCCAGTCGCACAGCAGTCAGATCCATCTTCACATTAAACTGTGCACGTCACAAGGTTGGTGCTTTGGGCTTTCATGCCCGTTTAGCATAATCGAGGTCAAGGTAGTAATGTGAAATGTGCTCAGTGTGATCTGTGGGTGCAGCTTCCAACACCTGGACTGGATCAGACTGCGGTGCAATGGGAGTCCTGTTGACATCGCAGGAGAGACAGCAGGGCAGGAGAAGAATTCAATTGAAGACAGATCTATATCTTACCTTGTCAACACTGATGATCTTCCCAACTCGGATATCTAGCCTGGAGGGGATGATCGCTTCTTCCTCAGAGTTTTGGGGATTTCCTTTCGCTGCCCCTTTTTTTGGACGGCGCTGGGTAAGCAGAGTTGGTCAGTTTCTTCAGCTCTGGACTCTCAAACTTCTTCCTGATGGGATCCAGGAGCTTGTTCAACGCCACCTCTACAGAGGCCTTCAGATCACCAGGGTGAATCCGCTGGGGGGGCAGAGGTCAGGGAAGAGGGAGACTTCAATGAGAGACTTTGGTGTCATGGCAGACAGAGGAGAGTACAGAGCACGTGCAAACTAACTCTTTCAAATGTTGCGTCTTTCGCTCTTGCAAGGCTTTACTGTACCTCCTCTGCAAAGTCCTTCTCCACATCCTCGATGACCGTATAGACTTTGTCACCTCCGAACTTCTCATCTCTTTTCACGGTAAACTCTGAAAGAAACCAggggacaaacaaacaaaattaggATCAATTTAAGGGCTGTGTTAAGCAATGTTAAACTTCTCAACAAGAAAACCGCAAATGATGTTTTTGAGTTGTAAATGAAAAGCACTCTTATTAATTAAGCAGAAGGCCAGCACTAAACGAGGGCAGGTGTAACTAGAGAGCCAGGGGAGTCACCCGAGTGCAGGGGGAAGAGGACATGCTTGACGAAGGACAGGACGCCGTTGTTCTCCACGTTCCCCGGCTCACAGAACGCCTTCTTCAGCTTCTTCTTCACGTCCTCCTTCCTGTCCAGGAGGTCGATCTTCGACTCCTGGGGTCACGGCACACAAGACACAAGGAACCACGCTCAGTACACCGCTTCTGCCTGGCTAAAACGTACTGCACTCTTTCTGTCTTCATAAACAGCAATCCCTAAaaaatcatgcattttattatctgCCGCTCTgtgcagttttcattttgcGGGAAGAAAGATGGgaaaatgtacatgtttctGCTCATGCGTGTCTCACATTTTCATAAGGTAAGATTTGcaggaacaaaaaatgtgaaatgtatttccCCCCAAGGCAAAGTGCTGATACCCAGTGGTGCAACCGTTTAAACAGGCATGAAGTTACAGAATTGAAATGCTCCGAGGAGAGGGTGTGCCTCTCGTTGGCTCAGGGTCGGCTCTCACCTCTTCCGAGGAGCTCATCTTGCCCCCAGTCAGCCCTGGCACCATGGGGTTCATCATGTGGATGCGTTTAGTATAGCCCAGGGATGGCAGGTACTGAGGAGAGGACAATGAAACGCACCCATAACCACTGAGAACATTGAAAACACGTCACCACCCACGCAAACTCATGACAGGAAAAGCCAAAATACCttgtcaaaaataaaacctctactttttatttatttattagcctttttctaattttatttactttttaattcacCACACTATAGTGCAAAGCCCTCAACTGATCCCTGTGATCCGAGTGCACACTACCTTTTCTGCCAGAGTGAAGATTTTCCTCTGATCCACACCGCCAAACTGGGCGTCCACCTTTAGATACTCCTCATCCAGCGCCTAAAAGAAAAGCAGGTTTAAGTGACTGTGCCggtccattaaaataaacgaCAATGTTACAGTGATTACCTGCTTACAGTCAGGGTAGTACCTGTAGTCCAGGGTACAGCAGGCCACTCAACAGGGGGTGTTCTACCTGCTTCACCACCTCAGCCCCAGCTTTCTTGGCATCGTGCTGGGTGACAACAGAGGACAGCCGGTACACATCCAGAGTGTACTCCCTGAGAGCTGGAAGTCAGTTCCTCGGATGAACTTGAGCTTGTCCAGAGGCACTCCGATACTCTCTAGCATGGCTTTGATGACCTGCTCGTAGTACTTGGTCCTGAGCTCCAGAAGCTCCCAGGGGGCCTTCATGTTGTCCAGGTAAGCGTGCAGATCAGCAAACAGGATGGTCACCTAtgaggataaatgaggaggagg

Function

symbol description
yars Predicted to enable tyrosine-tRNA ligase activity. Predicted to be involved in tyrosyl-tRNA aminoacylation. Predicted to act upstream of or within translation. Predicted to be located in cytosol and nuclear body. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease dominant intermediate C. Orthologous to human YARS1 (tyrosyl-tRNA synthetase 1).

NR:

description
PREDICTED: tyrosine--tRNA ligase, cytoplasmic

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129898 True 3333 TUCP 0.49 4 8548363 8552605

Neighbor

gene id symbol gene type direction distance location
AMCG00011037 NA coding upstream 1418 8537494 ~ 8546945 (+)
AMCG00011033 rbbp4,LOC107568807,LOC107584269,LOC105015627,LOC107709266 coding upstream 87503 8452328 ~ 8460860 (+)
AMCG00011032 NA coding upstream 114980 8427706 ~ 8433383 (+)
AMCG00011017 NA coding upstream 479999 8066837 ~ 8068364 (+)
AMCG00011020 NA coding upstream 489431 8054877 ~ 8058932 (+)
AMCG00011039 NA coding downstream 6595 8559200 ~ 8567070 (+)
AMCG00011038 NA coding downstream 16108 8568713 ~ 8577634 (+)
AMCG00011043 NA coding downstream 91718 8644323 ~ 8654378 (+)
AMCG00011044 NA coding downstream 116454 8669059 ~ 8693522 (+)
AMCG00011045 hpcal4,LOC107691524,LOC107091490,LOC102228321,LOC107562761 coding downstream 252146 8804751 ~ 8806377 (+)
G103868 NA non-coding upstream 439128 8102395 ~ 8109235 (+)
G103873 NA non-coding upstream 447345 8090966 ~ 8101018 (+)
G103850 NA non-coding upstream 478668 8061279 ~ 8069695 (+)
G103823 fam167b,LOC108234384,LOC101067225,LOC105925981 non-coding upstream 513670 8032729 ~ 8034693 (+)
G103800 hdac1,LOC107562876,LOC108272688,LOC107745719,LOC107584281 non-coding upstream 560450 7985084 ~ 7987913 (+)
G103959 NA non-coding downstream 31525 8584130 ~ 8590598 (+)
G103987 NA non-coding downstream 166343 8718948 ~ 8721777 (+)
G104004 NA non-coding downstream 293361 8845966 ~ 8857639 (+)
G104042 LOC106579881 non-coding downstream 395168 8947773 ~ 8948823 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding downstream 415273 8967878 ~ 8970770 (+)
AMCG00010994 NA other upstream 1444855 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 1627432 6892397 ~ 6920931 (+)
G103542 NA other upstream 1905735 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 2152879 6387036 ~ 6395484 (+)
AMCG00010922 NA other upstream 3905960 4634472 ~ 4642403 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 977869 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 1651012 10203617 ~ 10271863 (+)
G104273 NA other downstream 2266083 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 3091412 11644017 ~ 11651021 (+)
G104382 NA other downstream 3113593 11666198 ~ 11671340 (+)

Expression


Co-expression Network