G103800 (hdac1,LOC107562876,LOC108272688,LOC107745719,LOC107584281)


Basic Information

Item Value
gene id G103800
gene name hdac1,LOC107562876,LOC108272688,LOC107745719,LOC107584281
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7985084 ~ 7987913 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129719
TTCAAGAAACTACATCCTTTAATAGTTAAACcacatactttatttaaaatacagaacaaaacattgttgGGTAGAAATGCAATATTCTTTATCTTTTCTTAATACAAACTTttcaaaaaagtgaaataagcatttcaagaagaacaaggagaaaataaaaaaataaccaaaaagaaacaaacatgtctGTCAGACACCCGTGGGATGAGACAGTCTGGAAGAAAGTAGCACAGAGGAGCACATAATACAGCAGAACCTCAATGAAGAATGTGGATATTTGCCATTGACAATACAGTCACTGGTGGACAAGGTTATTGTTCCAAAATAAAACCCCACGACCCCCCAAAAGACATATATAAAGCAGGTACAGAAATCTAGAATTAACTAATGACGAAGATTAaaacactttttccacatttcagatattccatttcaataaatgtgggtggggggtgggtaaAAATCAAAACTGCTTCTTTAATCAAAAGTCCCCTGAAGAATAGACATAAGGTGTCTCACTACTTCTGAAGCACAACTTCCAAGGACCTGTGTATCATATCAGCACCATTTCAATATGTGCAGTACTgtactgatttttatttatattcaacCTCAAGCATTGGAAAGAGCTGGATGACACTCCAGCCGATGTTAATACATCATTTAGTATGGTTTGTTCAAAATCAAACGGGCAGATTTAAAGCACGGACAATAGGAAGGTTTATTAAGGCCCCCTCTCCCAATTTAAAAACCTGGTTTGGAAAAACACTGGATATTATTTCTTCCAGACAAAAGTAAAGCAACTGAAGAAAATCaattggcagtttttttttttttttttttttttttttttgggggggtaaaTCTAAAGCGTATTTTCTTAATACAAGCCTCTGAAAGGTCTTAAAAACACCACACAGCAGATGTAGAGAATTTCCATAACACATTAAACTAAAAAGTGGCACAAAGAAAAAGAGACTACAACTCCCTTCACGTTCTTCAGAAACACtcatgatttaaataacttACTGAAGCTAAACAAAGTTCTAaacatggaggaaaaaaaaaaaaaagttatctaCTGCTTTTATAAAAAGTTCCTTTCACCCTGGTCCTCACCATTTCAGCTGGTTTAGTTTAAAGGGAGACTTCAGGACAGAACTGCTGCCTTGTTATATTGGCATTTGGTTGAATCAGAAACGCATTACTCCAAAAAAACATCCTTgtaattcaaaaggaaaaaaacaaaaatggtcaaATGTAACCCAACCTTTTTAGTCCTGTTagaacacaaatattaaaatgtgtttagaaaataatttacagaGTCCATTCAGGATTTTGCTTTTCAGTGTGGATTTCTAAAGGGGTCTGGTTCTACTGTAGTCATGCAACGCTGAAAAGACCGGGGGCTGGCAGCTCTCCTCACGCGGTTTTCAGTTCTTCCTTCGCcCCctttgtttccattttctccTCTGCAGATTTTTCCTCCTCTTTTACATCCTTTTTCTCCTCTCCGTCTTTCTCCTCCTCAGTTTTCACTCGCTTTGCCTTCTTGTAATTGGCTGCGTTCCTCCTGCCGCCCCCCTGTCCCTCGTCCTCAGAGTCGGAGAACTCCTCATCACAGGCTATCCTCTTGTCATGCGCCCGGACTGCAAGAGGAGACACCCAGCCACAGGTACAGAGGTAAGGAACACCATTCATTTCCCTGAAGCCCTTATAAAAGGGTGACTCACATTCAGAAACAATTGCAGTATTGACTCACAGGAAAGCATATCATGTGTACACTTCTCTCTAGAGAATGACAGTTAAGCAGTGAAGTAAAACAACTGATCTTGGATTTAGAGCACTTGTGTCCATTAAAGCAGCCCCTAAACCCAGGATCTCAAAGCAGACATTTATTAACTTACACACAAGCATAAAGTGTTAGAAGAGTATAGTGTTCTTTAAGGAACAGATAGGTCAATTGCACTGTATTCTTTGACAGTAAA

Function

symbol description
hdac1 Enables transcription corepressor activity. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within with a positive effect on secondary heart field specification. Acts upstream of or within several processes, including animal organ development; determination of dorsal identity; and nervous system development. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex. Is expressed in immature eye; nervous system; pectoral fin; and pharyngeal arch. Orthologous to human HDAC1 (histone deacetylase 1).

NR:

description
PREDICTED: histone deacetylase 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129719 True 1991 lncRNA 0.38 3 7985084 7987913

Neighbor

gene id symbol gene type direction distance location
AMCG00011016 NA coding upstream 11357 7967340 ~ 7973727 (+)
AMCG00011015 NA coding upstream 206992 7769018 ~ 7778092 (+)
AMCG00011014 NA coding upstream 218065 7766279 ~ 7767019 (+)
AMCG00011010 NA coding upstream 366819 7611278 ~ 7618265 (+)
AMCG00011011 NA coding upstream 381012 7586266 ~ 7604072 (+)
AMCG00011019 NA coding downstream 7432 7995345 ~ 8011218 (+)
AMCG00011018 NA coding downstream 52908 8040821 ~ 8051286 (+)
AMCG00011020 NA coding downstream 66964 8054877 ~ 8058932 (+)
AMCG00011017 NA coding downstream 78924 8066837 ~ 8068364 (+)
AMCG00011032 NA coding downstream 439793 8427706 ~ 8433383 (+)
G103797 NA non-coding upstream 135055 7849794 ~ 7850029 (+)
G103761 NA non-coding upstream 357167 7624453 ~ 7627917 (+)
G103698 NA non-coding upstream 523931 7456761 ~ 7461153 (+)
G103688 NA non-coding upstream 532792 7390002 ~ 7452292 (+)
G103678 NA non-coding upstream 586964 7395628 ~ 7398120 (+)
G103823 fam167b,LOC108234384,LOC101067225,LOC105925981 non-coding downstream 44816 8032729 ~ 8034693 (+)
G103850 NA non-coding downstream 73366 8061279 ~ 8069695 (+)
G103873 NA non-coding downstream 103053 8090966 ~ 8101018 (+)
G103868 NA non-coding downstream 114482 8102395 ~ 8109235 (+)
G103959 NA non-coding downstream 596217 8584130 ~ 8590598 (+)
AMCG00010994 NA other upstream 881576 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 1064153 6892397 ~ 6920931 (+)
G103542 NA other upstream 1342456 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 1589600 6387036 ~ 6395484 (+)
AMCG00010922 NA other upstream 3342681 4634472 ~ 4642403 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 560450 8548363 ~ 8552605 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 1542561 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 2215704 10203617 ~ 10271863 (+)
G104273 NA other downstream 2830775 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 3656104 11644017 ~ 11651021 (+)

Expression


Co-expression Network