G104004


Basic Information

Item Value
gene id G104004
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8845966 ~ 8857639 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129978
GTGCAGAACAATTAAATCAGCTTTTATTGGAGACATGCAATAATTTCACCAGAAAGGTTAAAATATGGTTACAttcagtgcttaatttgtaaatcagaagGTGCTGGAACGCAAAGCATATATGAGAGCGGAGGGGTGACGAGGCAGGCGCATGTCCTGGAACAGAACAGTGCAGAATATGAGAGCAGGATCAGGCACATATTAAGCACTGGTTACATCGTTTTTTGTCTTCACAGTAGTGCCAAGACTGCACCTACAGCTCCACCAACACTTGCTACAGCACCAGTGGCTGCTGTGGAAAGTCCAGCTGCTCGATTGACTGGAGCACTGCCACTGTACTGCCCGCTGCAACTGCCCCGCCGTTGGCAACTGCAGCGGACGACATCATGCCAGCCGCATAAGATCCAACCGCTATCCCCCCGGCAGTGAAGCCGATTCCACCAAGAATCAATGGTAAGCCGACCACAGAGCGATTGACTGGAGCACTGCCACTGTACTGCCCGCTGCAACTGCCCCGCCGTTGGCAACTGCAGCGGACGACATCATGCCAGCCGCATAAGATCCGGCCGCTATCCCCCCGGCAGTGAAGCCGATTCCACCAAGAATCAATGGTACAGCGGCCACCGAGGCACCTTCACAACAAAGCCAAAAATTAAGCATTGTCTGAGCTCTGGGAAACACTGGTACagagttattgttttattttaattgaatcgCAATCATGACTGCCCCAATTTGCACATGATAATCCACTCCCTCCCGATCTCAGCTCACACCCAGTTCAAGGCATTGACTCCTACCTACTGTTGTCTTGACCAGACTGCACTGAGCTatcttcagaccctcatctctctgtTCATTCCCTGACCTCTGCAATCCTCCTGCACTACACTACTTTTGTGATAACCATCATGTTTTTACGTGATACTGAACTAGAATACAGgagacaaaacaatgatgtcagACGTTAGGGATTTTATACGAACTTACTTTAGGTTGCTACTAACTCAATACTtatccaattacattttaaatcacaaacacaatcaatcttaaaaatatctgtgaaaaaaCAACGCACCGTTTCGCTTTAATCAAAGTCCATGCGTCCatcatctttatttacacattttcttcaaaacaaggtaCAGGTGGTTGAAAACCGGTCTGTGACCCAACAATACACCATCTATCCCCCGCCCCATCCAATTTCCTGAAGTATTTCACTCCTTTCTCACCCAATTATCAATTAACTTAATGATCAagttatcaaatgaaaaataattgaattatgtatagtcaatgcaacatacagaaatacaagttatacaaaacatattattataaatgtttattaatacataaattggCTGCTACAAACATTACTATTTGAAGATCAGGAATATGTATGTGATCATGGACAAACAGAGCATGTCGATCAAATTGAATCTGGGACATCTCAGTAATAAtctaataacttaaaaatagaaactactcaatatgaattatcctgaacaaatgcacagtatgTATATCGTCAGACTATCGTTTTAGCCTGGGTCgaaacatacatacacgcaGTATATATGACTCCCCGCTTATTTgtaacattcacacattatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129978 True 1623 lncRNA 0.42 3 8845966 8857639

Neighbor

gene id symbol gene type direction distance location
AMCG00011047 NA coding upstream 7466 8828317 ~ 8838500 (+)
AMCG00011045 hpcal4,LOC107691524,LOC107091490,LOC102228321,LOC107562761 coding upstream 39589 8804751 ~ 8806377 (+)
AMCG00011044 NA coding upstream 152444 8669059 ~ 8693522 (+)
AMCG00011043 NA coding upstream 191588 8644323 ~ 8654378 (+)
AMCG00011038 NA coding upstream 268332 8568713 ~ 8577634 (+)
AMCG00011048 NA coding downstream 77449 8935088 ~ 8938784 (+)
AMCG00011053 NA coding downstream 96567 8954206 ~ 8960198 (+)
AMCG00011056 runx3,LOC106610817 coding downstream 264758 9122397 ~ 9126585 (+)
AMCG00011055 NA coding downstream 283959 9141598 ~ 9155179 (+)
AMCG00011062 NA coding downstream 434994 9292633 ~ 9297651 (+)
G103987 NA non-coding upstream 124189 8718948 ~ 8721777 (+)
G103959 NA non-coding upstream 255368 8584130 ~ 8590598 (+)
G103868 NA non-coding upstream 736731 8102395 ~ 8109235 (+)
G103873 NA non-coding upstream 744948 8090966 ~ 8101018 (+)
G103850 NA non-coding upstream 776271 8061279 ~ 8069695 (+)
G104042 LOC106579881 non-coding downstream 90134 8947773 ~ 8948823 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding downstream 110239 8967878 ~ 8970770 (+)
G104062 NA non-coding downstream 300682 9158321 ~ 9159219 (+)
G104079 NA non-coding downstream 365546 9223185 ~ 9226178 (+)
G104115 NA non-coding downstream 494734 9352373 ~ 9352587 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 293361 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 1742458 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 1925035 6892397 ~ 6920931 (+)
G103542 NA other upstream 2203338 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 2450482 6387036 ~ 6395484 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 672835 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 1345978 10203617 ~ 10271863 (+)
G104273 NA other downstream 1961049 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2786378 11644017 ~ 11651021 (+)
G104382 NA other downstream 2808559 11666198 ~ 11671340 (+)

Expression


Co-expression Network