G104062


Basic Information

Item Value
gene id G104062
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9158321 ~ 9159219 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130060
gggggtgggcagcatttctcttctcttttgcTCAGGAAaagaacacacattttttttttttttttaaagattgtgaCGGTCACTGTACCCCTTCCTCCGCTTTGCAATCTGTCACCTGTCTGGACAATCGGCGAGTTTCAGAAACCAGAACTATGCATCGGTACTGTACACATTCTTTTCTCTAAGGACATGCAGACCTGGATGATTTTATAGCTATTGGACAATGGTCAAGTAGCCATGGaacaacaacatttttcacCGCTAAAACCTTAATGAAAAGTCCCAAAGCAAGGAATTATTTTGCTGCCTGTAAtcttgcattattttacatttgttgttcagtttttaatcttgttttttttttgttttactgcaggAATAATACTGTCAATGTTGCATTTGTTATCAGTTAGTTGAAATTATTTACACCAAAAAGTGGGcagaaatattaaaagtatCCTTTTCCTGATCTCCACTGTATAGGCAGCAGGTAACTTAATTAGTATAATAATGATGcacaattttaatattatataactGCCTTTGCAGTCGGAAATGGTTAAAAGCACAATGGATACTTGAAAaatgtctattttcatttttttgactagttttattttctgtcgCCTTATGCTAAAAGCATCAAAATCAtgtaagttaatttaaattggtTCTATGTATATTGCTGTTCCATTGGTATAATACCTTGATATTAAGTGCTTGTGAAACAGTCTTGTGTGAATTATGTAGTTTTAAAAGCatcttaattaataaaaaaaaaagattaaaaaaaactcatgCTGTAAgactgcttgtttttgttcttttgatcataaaattataaatatcgGGCTTTAAAATGTCAGATGTCCCTGAAGAATAAACATTGTGAATGAAAC
>TU130061
gggggtgggcagcatttctcttctcttttgcTCAGGAAaagaacacacattttttttttttttttaaagattgtgaCGGTCACTGTACCCCTTCCTCCGCTTTGCAATCTGTCACCTGTCTGGACAATCGGCGAGTTTCAGAAACCAGAACTATGCATCGGTACTGTACACATTCTTTTCTCTAAGGACATGCAGACCTGGATGATTTTATAGCTATTGGACAATGGTCAAGTAGCCATGGaacaacaacatttttcacCGCTAAAACCTTAATGAAAAGTCCCAAAGCAAGGAATTATTTTGCTGCCTGTAAtcttgcattattttacatttgttgttcagtttttaatcttgttttttttttgttttactgcaggAATAATACTGTCAATGTTGCATTTGTTATCAGTTAGTTGAAATTATTTACACCAAAAAGTGGGcagaaatattaaaagtatCCTTTTCCTGATCTCCACTGTATAGGCAGCAGGTAACTTAATTAGTATAATAATGATGcacaattttaatattatataactGCCTTTGCAGTCGGAAATGGTTAAAAGCACAATGGATACTTGAAAaatgtctattttcatttttttgactagttttattttctgtcgCCTTATGCTAAAAGCATCAAAATCAtgtaagttaatttaaattggtTCTATGTATATTGCTGTTCCATTGGTATAATACCTTGATATTAAGTGCTTGTGAAACAGTCTTGTGTGAATTATGTAGTTTTAAAAGCatcttaattaataaaaaaaaaagattaaaaaaaactcatgCTGTAAgactgcttgtttttgttcttttgatcataaaattataaatatcgGGCTTTAAAATGTCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU130060 True 899 lncRNA 0.32 1 9158321 9159219
TU130061 False 865 lncRNA 0.32 1 9158321 9159185

Neighbor

gene id symbol gene type direction distance location
AMCG00011055 NA coding upstream 3142 9141598 ~ 9155179 (+)
AMCG00011056 runx3,LOC106610817 coding upstream 31736 9122397 ~ 9126585 (+)
AMCG00011053 NA coding upstream 198123 8954206 ~ 8960198 (+)
AMCG00011048 NA coding upstream 219537 8935088 ~ 8938784 (+)
AMCG00011047 NA coding upstream 319821 8828317 ~ 8838500 (+)
AMCG00011062 NA coding downstream 133414 9292633 ~ 9297651 (+)
AMCG00011064 NA coding downstream 167110 9326329 ~ 9344413 (+)
AMCG00011074 NA coding downstream 185312 9344531 ~ 9391101 (+)
AMCG00011065 hpca,LOC105005722,LOC103394251,LOC101072338 coding downstream 232179 9391398 ~ 9409014 (+)
AMCG00011066 NA coding downstream 265963 9425182 ~ 9430080 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding upstream 187551 8967878 ~ 8970770 (+)
G104042 LOC106579881 non-coding upstream 209498 8947773 ~ 8948823 (+)
G104004 NA non-coding upstream 300682 8845966 ~ 8857639 (+)
G103987 NA non-coding upstream 436544 8718948 ~ 8721777 (+)
G103959 NA non-coding upstream 567723 8584130 ~ 8590598 (+)
G104079 NA non-coding downstream 63966 9223185 ~ 9226178 (+)
G104115 NA non-coding downstream 193154 9352373 ~ 9352587 (+)
G104147 NA non-coding downstream 314955 9474174 ~ 9475843 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding downstream 318348 9477567 ~ 9481674 (+)
G104204 NA non-coding downstream 533925 9693144 ~ 9746864 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 605716 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 2054813 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 2237390 6892397 ~ 6920931 (+)
G103542 NA other upstream 2515693 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 2762837 6387036 ~ 6395484 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 371255 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 1044398 10203617 ~ 10271863 (+)
G104273 NA other downstream 1659469 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2484798 11644017 ~ 11651021 (+)
G104382 NA other downstream 2506979 11666198 ~ 11671340 (+)

Expression


Co-expression Network