G102945


Basic Information

Item Value
gene id G102945
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3434919 ~ 3457657 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU128615
tttttttttttttttttATTTGTTTCCCCAATTAAAAATggtctttaatttaaaaaaaaagacattcccAACATCCTCATGAATGTGTTCAGGCTGTTTCATCACTGTTCTGCATTTTCAAGCACTCACTTAGACcatctgttaaaaaacaaacttctaGGACAGGTGTACAGATCGAGTATAACAGTGAAAGGTTGAGTATAATACAGTGAATATTTCGGAACCATTTCCATCAACAATCTGCCATTGAACCAATACAATAAGATATTAAAAGAGTGCAGAGGGGGAAGCACAATTCTGGACATCCATTGTTCTCAGGGTGGGGACAGCGAATCCTTTTCACTCCGATGCATTTGCGGATGTGTCCAGAACAAACCTCACACAGGCTTAGCTGATGCAAATGTCAGGATTGGCTTACAGCATTGCCCATCGTTCTCATTTCATGTCAAACAGTACATACCCCTCCTACGACACACGTCCTGCCCAGTTCACTACGCTTACTTAAAACCTGTTTATATTTCTAGTCATAATAAGGAATTAAATGACAAATGGCCTTGAATGAAAGCTGAATGAAAGGAAAAGTCATTTGCAAAACATTCCACAGTTGCAGAATACAGAGAAAAATGTTTATGCAATGGAAGTAGTGTGCGATTTGGAAACTGCTAAATGCATACAGCTTTCAGAAGTCCTCTCACCAAAGTTGAAGGAACTGCTATGAAATGAAATATCAAGGAAATGATGATTTAACAAATTACCACCCCAACCTTTTGAGCTCAGTAGCATGCATCCCTTGCCACATGAAGAGATGTAATCACAGAGCACTGAACCACTGCACCCGGATTGTTATGTtaccagtaaaaacaaaacaacttagGGTTGATGAGAGAGCTTCATCTCAGTTCAAGTCTGCATTAACAATGGAAAGgatgagtgttttttttaggtttttatgCCCACGTTTCTGCCGCTAAACTAAGATAGAAACGATAAATATCCCATCTCAGTGAAGAAAGAAATAAGAGGGATGCTGGCACACAGGCTAGTACTTTTTAGACACGCTAaagaatctgaaaaataaaataataaaataattcagagaGTCACTGTAGGCCACGTCCCCCATCgttctaaaaacaaacagagaaaatgTGTGGATTGAGCTCCCTCCTTTGGTGGGAATCAGGCCTTGCGCTTCCTTCACCCACACGTGGAGCTCCCCAGTCAAGGGCATGCCGTTACCTGTAAGGTAGAAACAGACCTACCGATCAAACCTTTGTTTCAATAGGCCACCCTGGATAAAACCATCTCATGAAGAGGCGAGTGACCAGCCTACCATCTGATCCGGCGGGAACAAACTTCAAAGAAAGGATGATCGTTCCTCTGGATCCGAGAGTGTCCTGGGACATCTGGATCTGCGAGGTTGGAGGTATGACATCCATATAAATTCTCACACAATCCACAGACTAATGAGAATGCTACCATTACCAACAGGCACCTTCTGTAGGTGTCCTCAAATCTGAAGTGCATACGAGCAGGACTCACCCTGGGCACCAGGTCATGCCAGGCAGGCTGGGTGTGGCTCCAGTCCCACGTCGCCATGGCCACCTCCACCTCTCCCAGAAAGATGTTGCGGCGCAGGGGGTCGTGGTGCCACACGGACAGGTTCAGGGTGCGGTCCTTCAGCTCCAGCATCTTTATCTTGTACTGCGGAGTGACAAAGTGAAGGACGAGGGGCAACAGGGTAGGTGGGGGTTGTGCGTCatagtgtgtttttattgatgtCGGGCAAAACGTTTAGACTGGGAAAGACTACTGTTTCAGCTACACAAACAGGAGGACACCATGTCAGATCCCACTGGAGTGAAATGCAGGAAATTCAGCTGGTTGGACTGTGGGTTAAAATTTATGCGAGACCGATGTACAGAAATGCCGGGGACTTACTTTGAGGGTTTCATCAAATACAGGATTGATCGTCTTCTTCTTCACGGAGGTCTTCTTCTTACTCTGAGAGGATTTATCAGGGAGCAGGTAAGTCTTCACGTACCtaaaacacacaccaaacaaaaacaaaacgtctTAGCTTTTCAACTAGAAACAAAAAGGGGATTTATAAAGGATTCACGGACAAACATGCTCACAGTTCATTTAAAAGGTCAATGCCCTGTCCCCAGTTGAATTATTAATGCATGGGTTGCTCCAACaacacaatttacttttaaatgagagtATTTTGTAACAGTGATCTGAGCTGAAATGTTGCAAGCTTAAAGATAACCATATGCGAGTCATATTgctgttggtggtggtggtggtgggggaggatggcaataatgcaaacaaatgtgaaaaagatGGCAATGGAAATGCTAAAGGAACAGAAGGTTTGTAGATCTGTGCAAAaatcttaaacaaacaaacattcccacgtttttatttataagtagtacAGTGGCCTCGAACtctaaattaaactgcagtatGGTAGAGGTTCAGAGGTAGGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128615 True 2504 lncRNA 0.43 3 3434919 3457657

Neighbor

gene id symbol gene type direction distance location
AMCG00010890 NA coding upstream 37027 3388255 ~ 3397892 (+)
AMCG00010889 NA coding upstream 48562 3349756 ~ 3386357 (+)
AMCG00010885 NA coding upstream 151589 3277827 ~ 3283330 (+)
AMCG00010881 LOC106588497,LOC102218321,LOC107094257,LOC103154989 coding upstream 246049 3183119 ~ 3188870 (+)
AMCG00010882 LOC104921322 coding upstream 252263 3179960 ~ 3182656 (+)
AMCG00010897 NA coding downstream 91808 3549465 ~ 3550451 (+)
AMCG00010903 NA coding downstream 212798 3670455 ~ 3677090 (+)
AMCG00010905 LOC107688368,LOC107602377,LOC107654743 coding downstream 373657 3831314 ~ 3835049 (+)
AMCG00010907 NA coding downstream 432306 3889963 ~ 3893566 (+)
AMCG00010906 LOC107592052,LOC104955441 coding downstream 458632 3916289 ~ 3946921 (+)
G102944 NA non-coding upstream 1772 3432815 ~ 3433147 (+)
G102859 NA non-coding upstream 304655 3093934 ~ 3130264 (+)
G102860 NA non-coding upstream 331277 3099921 ~ 3103642 (+)
G102843 NA non-coding upstream 407522 3027068 ~ 3027397 (+)
G102693 NA non-coding upstream 774061 2623606 ~ 2660858 (+)
G102959 NA non-coding downstream 2205 3459862 ~ 3462503 (+)
G103035 NA non-coding downstream 135011 3592668 ~ 3593407 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding downstream 830366 4288023 ~ 4290680 (+)
G103150 NA non-coding downstream 980220 4437877 ~ 4438136 (+)
G103152 NA non-coding downstream 1078680 4536337 ~ 4619656 (+)
AMCG00010888 NA other upstream 6490 3421082 ~ 3428429 (+)
G102921 NA other upstream 36413 3331584 ~ 3398506 (+)
AMCG00010886 NA other upstream 96503 3331719 ~ 3338416 (+)
AMCG00010884 NA other upstream 123966 3301956 ~ 3310953 (+)
AMCG00010856 NA other upstream 656886 2769140 ~ 2778033 (+)
G103030 NA other downstream 119578 3577235 ~ 3580277 (+)
G103078 NA other downstream 592281 4049938 ~ 4083586 (+)
AMCG00010922 NA other downstream 1176815 4634472 ~ 4642403 (+)
AMCG00010979 NA other downstream 2929379 6387036 ~ 6395484 (+)
G103542 NA other downstream 3184326 6641983 ~ 6642628 (+)

Expression


Co-expression Network