CI01000058_01453383_01456154 (CHIA.2)


Basic Information

Item Value
gene id CI01000058_01453383_01456154
gene name CHIA.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1453084 ~ 1456284 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_01453383_01456154.mRNA
ATTTTTCAAGCTTGAGTTACCCCAGGTATGTCAGAATGTCATTCAGCTTAATATCTTTACTTTTGCTATTAGTTTAAATGTCATTTGAAAAACTCTTCTTTGTTACTTACAGAAAAAAATCGGAATAAAAATGGGGAAGCTTACACTTGTAGCAGCTTTCTCCATGGAAATGGGCTGCTACTTCACCAACTGGTCCCAGTACAGACCTGGAATTGGAAAGTATACACCTGCAAATGTCGACCCTTTCCTTTGTACACACCTTCTCTATGCATTCGCAATGATCAACCATGCCAACGAGCTTGTCACATATGAGTGGAACGATGAGACTCTTTACAAGGCTTTCAATGAACTCAAAGACAGAAATCCCCATCTTGTAACTCTCTTGGCTGTTGGTGGATGGAACTTTGGTTCATCACAGTTCTCCATCATGGTGTCCAGTGCAGAAAACCGTCAAAAGTTCATTCAGTCTTCCATCAAATTCCTGAGAACTTATGGATTTGATGGTATGGACTTGGACTGGGAATATCCTGGATCAAGAGGAAGTCCACCTGAAGACAAACAAAGATTCACACTGCTGTGCAAGGAACTTATTGAGGCATATGAGGCAGAGGGCATAGCTACTGGCAAACGCAGACTGGTGCTGTCTGCTGCTGTAGCAGCTGGTAAAGACACAATTGATGGTGGATATGAGATTGCTGAAATTGCCAAGTACCTGGACTTCATCAATATTATGACTTATGACTTCCATGGAACTTGGGAAAGATTTACAGGACATAACAGCCCCCTGTACCAAGGCTCAAAGGACGAAGGAGAACTGGTTTACTTCAATACCGATTTCGCTATGCGCTACTGGAGGGACAACGGTACCCCTGTGGAGAAACTCAGAATGGGTTTCGCAACATATGGTCGCACATTCCGTCTGACATCTACAGATACTGAAGTTGGAGCCCCAGCTAGTGGACCGGCTTCAGCTGGAACCTACACTCGTGAGGCTGGATTCTGGTCTTACTATGAGATCTGTGGCTTCCTAGAGGGAACAACAATCCAGTGGATTGATGATCAGAAGGTGCCCTATGCCACAAAGAACAGCGAGTGGGTTGGATTTGACACCAAGGAGAGCTTTGAAACTAAGGTCCGTTATCTGAAAGACATGAAATTTGGTGGAGCCTTCGTGTGGGCGCTTGATCTGGATGACTTTGCTGGACAGTTCTGTAATCAGGGGAATCATCCTCTCATGGGCCATCTGCGCAATCTTCTGGATATCGGACCAGGATTCTGTAACGGGATGCCAGATGGACTCTATCCTCACCCTGAAGACCCCAACAAATATTATAACTGTGCAGCAGGCACTACTTACATCGATAACTGTGGCCCAGGCACTGTGTTTGATGATAGCTGTAAATGCTGTGGCTGGCCTAAACACTAAGGGACCATTAATGTGAAAAAACATATACGAAAAGTGAAACAGGACACTGCAAATATGCTTAAGCACACAAATGAATCCAAACTAAACATCTATGACTACAACTATTTTATATAAAGGAAATTTGTGTAGACTGAACATAATTCCTTGTGCTGTATCTTTCCATTTGAGTGTATTTTATTAGTGTATAATGCTTGTTTTTGTTGCTTCTTTTTGAATAACTCAGTCTGTAAATCTGTTAATATTACTAGTGAGTAAAAATGCACTTTAAAGAAAAAAAAATGAAACCTCATATGAATAAA

Function

symbol description
chia.2 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region. Is expressed in gut and liver. Human ortholog(s) of this gene implicated in asthma and schizophrenia. Orthologous to several human genes including CHIT1 (chitinase 1); CHIA (chitinase acidic); and OVGP1 (oviductal glycoprotein 1).

NR:

description
Zgc:55941

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_01453383_01456154.mRNA True 1725 mRNA 0.42 10 1453084 1456284

Neighbor

gene id symbol gene type direction distance location
CI01000058_01418324_01423047 NA coding downstream 29557 1417497 ~ 1423527 (-)
CI01000058_01411383_01413893 NA coding downstream 38914 1410687 ~ 1414170 (-)
CI01000058_01360070_01364732 NA coding downstream 88352 1358642 ~ 1364732 (-)
CI01000058_01317202_01318789 NA coding downstream 132904 1317130 ~ 1320180 (-)
CI01000058_01292655_01293207 NA coding downstream 159877 1291960 ~ 1293207 (-)
CI01000058_01462558_01465691 CHIA.1 coding upstream 6239 1462523 ~ 1466129 (-)
CI01000058_01510773_01517931 NA coding upstream 54066 1510350 ~ 1519182 (-)
CI01000058_01528111_01564969 NFASC, NFASCA coding upstream 71215 1527499 ~ 1564969 (-)
CI01000058_01680894_01693752 NA coding upstream 224510 1680794 ~ 1694205 (-)
CI01000058_01694694_01723697 NA coding upstream 238395 1694679 ~ 1724208 (-)
G248914 NA non-coding downstream 18155 1431615 ~ 1434929 (-)
G248901 NA non-coding downstream 51342 1401538 ~ 1401742 (-)
G248899 NA non-coding downstream 52219 1400653 ~ 1400865 (-)
G248895 NA non-coding downstream 71735 1381150 ~ 1381349 (-)
G248885 NA non-coding downstream 84692 1358590 ~ 1368392 (-)
G248943 NA non-coding upstream 149654 1605938 ~ 1609817 (-)
G248955 NA non-coding upstream 161167 1617451 ~ 1617654 (-)
G248958 NA non-coding upstream 164729 1621013 ~ 1622953 (-)
G249014 NA non-coding upstream 299677 1755961 ~ 1768102 (-)
G249024 NA non-coding upstream 334450 1790734 ~ 1791212 (-)
G247592 NA other downstream 798135 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 1402199 2858483 ~ 2861491 (-)
G250230 NA other upstream 2232359 3688643 ~ 3696711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003435 chia.2 coding NC_007122.7 CM002895.2 24001993 ~ 24008739 (+)
bowfin (Amia calva) AMCG00013931 NA coding CM030125.1 CM030125.1 47244382 ~ 47274829 (-)