CI01000058_02859435_02860658 (FAM72A)


Basic Information

Item Value
gene id CI01000058_02859435_02860658
gene name FAM72A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2858483 ~ 2861491 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02859435_02860658.mRNA
AGCAACATGTCCCCACATATGGCTCTTTAGGAGCATACAATGTGCCGCAACAGGATGTCAAAGACCACGTGATGATAAAAGAATCACCGAATCGTTTTTGAACCAGCTCTTTGAAACAACTCGCTCGAAATTTGCGGAAATGAGTCGGACTTCCCCCTCGCCAGTGGTTTTGGCACTGCAACCAATCACCTAAGGAATTTGAGCTGACCAATCATGTGTTAGATATGCTAATTTGGAACCAATCAGCGTTAGAAATCAGGCTGTTTGAAAATATTTCAGGAAGTGAATATCCGCTTTGACGCGGACGTAAACAAACGTAGCTTAGCAATCTATTCACTGTTGTAACGACAGAGAGATTGTATAGTAGTACAATGTATTTCTCTGCCGCCTAGATCTAGAACGGTCTGATATCCGATAACAGGTAAGAATGGTTTTATGGCATGCTTGGTAAAAAAACTAGTTAATATTTTAGTTAGCAAGCTAGCTTTCTAATAACAAGAAAGGTACAGCTCTTCTGTAATCTAACAGAAGCGAAAAATTACCTCTAGGAATTACTATGATTTACATCCGTAATGTTAATTTGAATGGCTTTTCCGTTTTTGTGATCAAACGACTCTTGACTTGGACACACTGCTAACGTAATACAGGTAAAAAAAACAAAAAAAAACGGGCTAGAGCTAGCTGGCTAGACAGGTGTAGGTCGTCATAGTCCGACTGTTGAAACATCTACTGTAGCTTTCCGTTTAGGTTCTGACTCTCTGTCTGATCATCTCTGTAATCAACAGGAACCGCGTTTGGTTAGGAGCTTTACTTGAGAAGATCTCAACTCAACAATGTCTACTTCAAATTTCAAGAATAAGTGTGTGACGCAAGTCAACTGTGTATACTGTGATAGTCTGCTGTGTATGAGGGGGATGAAAGCAGTACTTTTGGCTGATACGGAAATAGAGTTGTTCTCAACCGACATACCCCCAAATAGGACAGTTGATTTTGTGGCAAGCTGCTATTCTACTGAAAGCTGCAAATGCAAATTAAGAGACATTGCTTGCTTGAAATGTGGGAATGTTGTGGGATATCACGTGGTGGCCCCATGCAAGCCCTGCTTGCTCTCCTGCAACAATGGTCACTTCTGGATGTTCAACAGTGATGCTGTGTCCACCATCAATAGACTGGATGCAACAGGTTTGAGACATCTGGTGTAAAAACACTGTCTATGCCCACTGCTTATGGTCAGACAGCATTTGCATACCATTGTTTCATAGATTATCTGCTCATATCCTTCAAAGATTCTATGTAAACACAAAAGGTTTGTAACAGACTTTGACAAAACTTCTTCAAACATTTACAAATCTGCTTGAAGAACAGTTGCGTCTATGTTTTTGCTGTTTTTGGCTGTTTAATGCTCAGTAATAAA
>TU282944
ACGCGGACGTAAACAAACGTAGCTTAGCAATCTATTCACTGTTGTAACGACAGAGAGATTGTATAGTAGTACAATGTATTTCTCTGCCGCCTAGATCTAGAACGGTCTGATATCCGATAACAGGAACCGCGTTTGGTTAGGAGCTTTACTTGAGAAGATCTCAACTCAACAATGTCTACTTCAAATTTCAAGAATAAGTGTGTGACGCAAGTCAACTGTGTATACTGTGATAGTCTGCTGTGTATGAGGGGGATGAAAGCAGTACTTTTGGCTGATACGGAAATAGAGTTGTTCTCAACCGACATACCCCCAAATAGGACAGTTGATTTTGTGGCAAGCTGCTATTCTACTGAAAGCTGCAAATGCAAATTAAGAGACATTGCTTGCTTGAAATGTGGGAATGTTGTGGGATATCACGTGGTGGCCCCATGCAAGCCCTGCTTGCTCTCCTGCAACAATGGTCACTTCTGGATGTTCAACAGTGATGCTGTGTCCACCATCAATAGACTGGATGCAACAGGTTTGAGACATCTGGTGTAAAAACACTGTCTATGCCCACTGCTTATGGTCAGACAGCATTTGCATACCATTGTTTCATAGATTATCTGCTCATATCCTTCAAAGATTCTATGTAAACACAAAAGGTTTGTAACAGACTTTGACAAAACTTCTTCAAACATTTACAAATCTGCTTGAAGAACAGTTGCGTCTATGTTTTTGCTGTTTTTGGCTGTTTAATGCTCAGTAATAAACATTGATTATGCATGGATTGACTCACACTAGTGAAGGTTTTTATATGCAGGTGAAGCATGTAAAACAAGTTGTGGGATCTGAAAGAACTGTATAAATGGTTGTCAAATAAATCCTAAAAAACAGTTCAAGGCATATCTTCTGATACAAAATGTTGAAAGCTTTTTTTGTGTGTGTGTGTGTGTATTTGGTCTGTCACTAAAAGGAAATTTTAAAAGGTATAAATCTTCAATAATTGAGGCCTTTACCTGATACACTTTGAGGATGTCTTTATTGCAAAAATAGTGTGCCAGGCTAGTCTTTTAACTTTTGTTTTGTTTTGTTTGTTTCAGAAGATGTGCCTTGTACTATAACATTGTCATAACTGATTGAAACCCAGCCAAAAAGCACCTTAAGTTTTTTTACAACACAAGATGCTGCCAACTGATCTTTCAACTGAACTTTCGATTATTGTGTAGTGTAAGTTGGGAAGCAACTGTAAGCCAACCTGTGAATCACTATTAGGCAAGATAAGTTATGTTTCATTTCATGTGTATTTAAGATGAAATTAAGCTTAACTCAAATACACCACCATTCAAAATTTTGGGGTCAGTGAATTTTTTTATTTATTTTTAAAGTAATTAATACTTTTATTCCAGCAAGGATGCATTAAATTGATCAAAAGTGACAATAAACACATTTAGAATGTTCCAAAAGATTTCTGTTTTAAATAAGTTCTGTTCTTTTGATCATGTGACACTGA

Function

symbol description
fam72a Predicted to act upstream of or within negative regulation of brain-derived neurotrophic factor-activated receptor activity and positive regulation of apoptotic process. Located in cytosol and intracellular membrane-bounded organelle.

NR:

description
Zgc:101564

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02859435_02860658.mRNA False 1414 mRNA 0.40 3 2859223 2861491
TU282944 True 1492 TUCP 0.36 4 2858483 2861193

Neighbor

gene id symbol gene type direction distance location
CI01000058_02558119_02571796 NA coding downstream 285993 2558028 ~ 2573230 (-)
CI01000058_02548351_02550351 NA coding downstream 308675 2548010 ~ 2550548 (-)
CI01000058_02507677_02545533 FOXP4 coding downstream 312810 2507594 ~ 2546413 (-)
CI01000058_02463470_02484038 MDFI coding downstream 375185 2462305 ~ 2484038 (-)
CI01000058_02366247_02370447 NA coding downstream 488467 2364878 ~ 2370756 (-)
CI01000058_02863488_02874502 NA coding upstream 1766 2863257 ~ 2874660 (-)
CI01000058_03112748_03117231 IL10 coding upstream 250741 3112232 ~ 3117231 (-)
CI01000058_03128328_03131680 NA coding upstream 266784 3128275 ~ 3131862 (-)
CI01000058_03136045_03137264 PRELP coding upstream 274208 3135699 ~ 3137264 (-)
CI01000058_03154548_03160071 NA coding upstream 293048 3154539 ~ 3160071 (-)
G249311 NA non-coding downstream 150154 2708704 ~ 2709069 (-)
G249309 NA non-coding downstream 151754 2707191 ~ 2707469 (-)
G249300 NA non-coding downstream 166550 2692426 ~ 2692673 (-)
G249296 NA non-coding downstream 181957 2677050 ~ 2677266 (-)
G249294 NA non-coding downstream 185571 2673403 ~ 2673652 (-)
G249435 NA non-coding upstream 16811 2878302 ~ 2878782 (-)
G249447 NA non-coding upstream 32176 2893667 ~ 2894162 (-)
G249317 NA non-coding upstream 61176 2922667 ~ 3028165 (-)
G249325 NA non-coding upstream 69233 2930724 ~ 2934245 (-)
G247592 NA other downstream 2204274 646443 ~ 654949 (-)
G250230 NA other upstream 827152 3688643 ~ 3696711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location