CI01000058_03136045_03137264 (PRELP)


Basic Information

Item Value
gene id CI01000058_03136045_03137264
gene name PRELP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3135699 ~ 3137264 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_03136045_03137264.mRNA
ATGAAAGCTGGGCTTGCATACTGCTCTCTTCTTGTCCTTCTTCTGATCACGGATGTCTGTGGCCAGCGAAGACCAAGACCAAAGCCTGTCCGCCCATCTACCACCAAGAAACCTCCTGCCCCCAAAAAACCATCCTCTCCTGCCCCCAAATCTGCACCCGAACCCCAGGAACCCACAGATTTCCCCCCTCCGATCCTAGGCCCTCCCTCTGAATTCCCAGACTGCCCCAGAGAGTGTTTTTGCCCACCATCTTACCCAAATGCCCTGTACTGTGAAAACCGCAACCTCCGGAAGGTCCCGATCATCCCATTCCGAACCCACTATCTGTACCTACAGAACAACTACATTGATCAAGTAACTGCAGACTCCTTTAACAACTGCACTGAGCTTAAGTGGATAAATCTGGGAAACAACCGCATCCGTTCGGTGGAGAAACAAGTGTTTGAGAAGCTGCCAAACCTCCTTTATCTTTATATGCAGAGGAACCAGCTAAAGGAGGTGCCCGACGACCTGCCGGTCGGTCTGGAGCAGCTTAGACTCAGCCGCAACCAGATCTCAAAGATCCCTCCTGGAGCGTTCAGCAAGATGAAACATCTTGCGCTTCTGGATCTGCATCACAACAAGATCAGCGACAGCAGCATGGGAAAGAACATCTTCAAAGATCTGAAGAACTTGATTCAGCTCAATCTGGCCCACAACATCCTACGGAAGATGCCTGCAAATATACCCAACAGCCTCTTCCAACTGTTCCTGGACAGAAATAACATTGAAGAGATTCCACAGGACTACTTCAAGGATTTCACAAACCTAGCCTTTGTGAGACTTAACTACAACCAGCTTAGTGACAAAGGCCTTCCAAGGATGGTGTTCAACGTGAGCTCACTGTTGGATTTGCATTTGGCCCATAACAAGCTGAGCACTGTTCCCCTGTTCAACTCTGAGCTGGAGCAACTTCACCTCAACAACAATAACATTGAGAATATAAACGGCACTGAGATCTGCCCCACTAACTCTCACAACATGCACGATGAAAACGGAGCACCCAAACTGAGATACCTGCGTCTGGATGGCAATCACTTGAGTCCTCCTGTGCCCTTTGATATCATAATGTGCTTCAGACACCTCCATGCTATAGTAATATAAGATGTTATGAGTGATGAACATGATTTATGTATGCCTGTGCACAACCAGGCCTTCCTGTCTACTTGACAGTACTGATTGAATCAAACAGTACCAGAGAAAACAAGCAAGGAATTAAGAACAAATGGCAATGCATTTTTTAAAAAAATTTTTTTTTTTTTTTTTTATCTTTAACGTTCAGGAATGTTTCAGTGTGTAACCTAAAAACCTTCGATGCATCGTATTTATTGAATTTCCTGCCTTGAATACAACTGAGCATGAGTATTCTGCATTAAACGTTTCTATGTGATTATACAGAACAGAAGCAGCAACAATGGCTGAGTGGAATTAATTAAACCCTAAAAATAAA

Function

symbol description
prelp Predicted to be an extracellular matrix structural constituent. Predicted to be located in collagen-containing extracellular matrix. Predicted to be active in extracellular space. Is expressed in cranial ganglion; myotome; and pectoral fin. Orthologous to human PRELP (proline and arginine rich end leucine rich repeat protein).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K08125 PRELP; prolargin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_03136045_03137264.mRNA True 1489 mRNA 0.45 2 3135699 3137264

Neighbor

gene id symbol gene type direction distance location
CI01000058_03128328_03131680 NA coding downstream 3837 3128275 ~ 3131862 (-)
CI01000058_03112748_03117231 IL10 coding downstream 18468 3112232 ~ 3117231 (-)
CI01000058_02863488_02874502 NA coding downstream 261039 2863257 ~ 2874660 (-)
CI01000058_02859435_02860658 FAM72A coding downstream 274208 2858483 ~ 2861491 (-)
CI01000058_02558119_02571796 NA coding downstream 562469 2558028 ~ 2573230 (-)
CI01000058_03154548_03160071 NA coding upstream 17275 3154539 ~ 3160071 (-)
CI01000058_03239666_03330001 CDH4 coding upstream 102402 3239666 ~ 3330003 (-)
CI01000058_03668662_03671701 FEZF2 coding upstream 531282 3668546 ~ 3672185 (-)
CI01000058_03684461_03827727 CADPS, CADPSA coding upstream 547197 3684461 ~ 3827727 (-)
CI01000058_03904018_03906800 THOC7 coding upstream 766633 3903897 ~ 3908108 (-)
G249538 NA non-coding downstream 8096 3127404 ~ 3127603 (-)
G249537 NA non-coding downstream 12935 3121863 ~ 3122764 (-)
G249536 NA non-coding downstream 17579 3117898 ~ 3118120 (-)
G249510 NA non-coding downstream 33743 3065654 ~ 3101956 (-)
G249501 NA non-coding downstream 83217 3052230 ~ 3052482 (-)
G249541 NA non-coding upstream 3983 3141247 ~ 3141533 (-)
G249542 NA non-coding upstream 6081 3143345 ~ 3143597 (-)
G249543 NA non-coding upstream 6642 3143906 ~ 3144133 (-)
G249546 NA non-coding upstream 9021 3146285 ~ 3146672 (-)
G249529 NA non-coding upstream 12728 3149992 ~ 3150372 (-)
G247592 NA other downstream 2480750 646443 ~ 654949 (-)
G250230 NA other upstream 551379 3688643 ~ 3696711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003410 prelp coding NC_007122.7 CM002895.2 21076872 ~ 21086254 (+)