RNA id: CI01000058_03136045_03137264.mRNA


Basic Information

Item Value
RNA id CI01000058_03136045_03137264.mRNA
length 1489
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000058_03136045_03137264
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3135699 ~ 3137264 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAAGCTGGGCTTGCATACTGCTCTCTTCTTGTCCTTCTTCTGATCACGGATGTCTGTGGCCAGCGAAGACCAAGACCAAAGCCTGTCCGCCCATCTACCACCAAGAAACCTCCTGCCCCCAAAAAACCATCCTCTCCTGCCCCCAAATCTGCACCCGAACCCCAGGAACCCACAGATTTCCCCCCTCCGATCCTAGGCCCTCCCTCTGAATTCCCAGACTGCCCCAGAGAGTGTTTTTGCCCACCATCTTACCCAAATGCCCTGTACTGTGAAAACCGCAACCTCCGGAAGGTCCCGATCATCCCATTCCGAACCCACTATCTGTACCTACAGAACAACTACATTGATCAAGTAACTGCAGACTCCTTTAACAACTGCACTGAGCTTAAGTGGATAAATCTGGGAAACAACCGCATCCGTTCGGTGGAGAAACAAGTGTTTGAGAAGCTGCCAAACCTCCTTTATCTTTATATGCAGAGGAACCAGCTAAAGGAGGTGCCCGACGACCTGCCGGTCGGTCTGGAGCAGCTTAGACTCAGCCGCAACCAGATCTCAAAGATCCCTCCTGGAGCGTTCAGCAAGATGAAACATCTTGCGCTTCTGGATCTGCATCACAACAAGATCAGCGACAGCAGCATGGGAAAGAACATCTTCAAAGATCTGAAGAACTTGATTCAGCTCAATCTGGCCCACAACATCCTACGGAAGATGCCTGCAAATATACCCAACAGCCTCTTCCAACTGTTCCTGGACAGAAATAACATTGAAGAGATTCCACAGGACTACTTCAAGGATTTCACAAACCTAGCCTTTGTGAGACTTAACTACAACCAGCTTAGTGACAAAGGCCTTCCAAGGATGGTGTTCAACGTGAGCTCACTGTTGGATTTGCATTTGGCCCATAACAAGCTGAGCACTGTTCCCCTGTTCAACTCTGAGCTGGAGCAACTTCACCTCAACAACAATAACATTGAGAATATAAACGGCACTGAGATCTGCCCCACTAACTCTCACAACATGCACGATGAAAACGGAGCACCCAAACTGAGATACCTGCGTCTGGATGGCAATCACTTGAGTCCTCCTGTGCCCTTTGATATCATAATGTGCTTCAGACACCTCCATGCTATAGTAATATAAGATGTTATGAGTGATGAACATGATTTATGTATGCCTGTGCACAACCAGGCCTTCCTGTCTACTTGACAGTACTGATTGAATCAAACAGTACCAGAGAAAACAAGCAAGGAATTAAGAACAAATGGCAATGCATTTTTTAAAAAAATTTTTTTTTTTTTTTTTTATCTTTAACGTTCAGGAATGTTTCAGTGTGTAACCTAAAAACCTTCGATGCATCGTATTTATTGAATTTCCTGCCTTGAATACAACTGAGCATGAGTATTCTGCATTAAACGTTTCTATGTGATTATACAGAACAGAAGCAGCAACAATGGCTGAGTGGAATTAATTAAACCCTAAAAATAAA

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K08125 PRELP; prolargin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283187 lncRNA downstream 8096 3127404 ~ 3127603 (-) True G249538
TU283186 lncRNA downstream 12935 3121863 ~ 3122764 (-) True G249537
TU283185 lncRNA downstream 17579 3117898 ~ 3118120 (-) True G249536
TU283159 lncRNA downstream 33743 3065654 ~ 3101956 (-) True G249510
TU283146 lncRNA downstream 83217 3052230 ~ 3052482 (-) True G249501
TU283190 lncRNA upstream 3983 3141247 ~ 3141533 (-) True G249541
TU283191 lncRNA upstream 6081 3143345 ~ 3143597 (-) True G249542
TU283192 lncRNA upstream 6642 3143906 ~ 3144133 (-) True G249543
TU283195 lncRNA upstream 9021 3146285 ~ 3146672 (-) True G249546
TU283178 lncRNA upstream 12728 3149992 ~ 3150372 (-) True G249529
CI01000058_03128328_03131680.mRNA mRNA downstream 3837 3128275 ~ 3131862 (-) True CI01000058_03128328_03131680
CI01000058_03112748_03117231.mRNA mRNA downstream 18468 3112232 ~ 3117231 (-) True CI01000058_03112748_03117231
CI01000058_02863488_02874502.mRNA mRNA downstream 261039 2863257 ~ 2874660 (-) False CI01000058_02863488_02874502
CI01000058_02859435_02860658.mRNA mRNA downstream 274208 2859223 ~ 2861491 (-) False CI01000058_02859435_02860658
CI01000058_02558119_02571796.mRNA mRNA downstream 562469 2558028 ~ 2573230 (-) True CI01000058_02558119_02571796
CI01000058_03154548_03160071.mRNA mRNA upstream 17275 3154539 ~ 3160071 (-) True CI01000058_03154548_03160071
CI01000058_03239666_03330001.mRNA mRNA upstream 102402 3239666 ~ 3330001 (-) False CI01000058_03239666_03330001
CI01000058_03668662_03671701.mRNA mRNA upstream 531282 3668546 ~ 3672185 (-) True CI01000058_03668662_03671701
CI01000058_03684461_03827727.mRNA mRNA upstream 547197 3684461 ~ 3827727 (-) False CI01000058_03684461_03827727
CI01000058_03904018_03906800.mRNA mRNA upstream 766633 3903897 ~ 3908108 (-) True CI01000058_03904018_03906800
TU282944 other downstream 274506 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU281026 other downstream 2480750 646443 ~ 654949 (-) True G247592
TU283989 other upstream 551379 3688643 ~ 3696711 (-) True G250230

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006679 True 2116 mRNA 0.43 3 NC_007122.7 21076872 ~ 21086254 (+)