RNA id: CI01000058_03904018_03906800.mRNA


Basic Information

Item Value
RNA id CI01000058_03904018_03906800.mRNA
length 1990
RNA type mRNA
GC content 0.35
exon number 8
gene id CI01000058_03904018_03906800
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3903897 ~ 3908108 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATCCACATGCAGCCGACACAACTTTAAAATAACTTTGGCAATCTAATAATGAGGATAAAAATCTTTGCTGTTTATGGATTTGCTGTAATGAATCCTTTGAGTCGGATCTTTTCAATGAATAAGTTGAACCGGTTCACAAAACCGATCGAACCGACTCGTTGAACCGAGAACAGTTTCAATTCGTAATGAGTCAAGAACCCAAGAATGACCGAGATAATAAGAGCATATTAAAACATAAAAAAAACTGTTTCAACCAAGAAATGTGGATAAATTGTGCTATTTCATAAGGAAAATGTGTATTTTATTTATGCACTTATATAATTTAAAGTATAAAGACCTACTTAATACTGTGGGGAAATTATATGTTGATTACATTACATTGTGTTTTCTATTATCTGTAGTACTGTAATATTTTAATCAAATAGGGCCTATATTTTTTTTTAAAATATATTTTCATATATTAAATTCAAAGTTTAAAAAAAATGATATTTATATTTTATAGCTGTTATTTGTTTTGTTCATTTTATTTAGTAGTAAGTTATTTAAAGTAAAATGTATTTATTTTAATTAGTTTATTATTTAATCGAATGTACTAGTTTATTTAGGTAATTAGTTTAATCTTTTTAGCATTTATTTAGCATTTATTTATGGTGCATTATGATGCATAAGATCATATTTCTTAATGTAGATGCATGTTTTATTCATGTTTAAGGACTTTCATATTAGCCTATGTAAATGAATTTATGTTTTTTTTTATTAGCTGAATCATGGCTACAACAAACTGAACTAACGTTAGGGGGTAAAGACTTGCTGATAAGCTGTTTTTGTAAACGGTTGTACTATGTCTTAACATAAATGCATGTTATATTTATATTCTAAATGACTTAATGTTTTTATAAGCTAAATCATGGCTACAACAAACTGAACTGACGTTATGGCGTAAAAGAATTTCTGAATCTTTTTTTTAAATGTTCTTTCAAACGAACTGTTCTAATGAACCGATTCGCGGAAACGAGTCGGACCTCCCACCACCGTCAAAAACTACTGAACTGCTTACCGAAACAGCATTTCTAAAAGTCATACGAATCGTTGAAACGTTTGAAAGAGTAATTTACGCACAACTCTGAAATGACTCAATAACGATGAAACAAAACCTTGCAATATAGGGAATTGCTATGATACGCGCTGTGGGGTCGTCGGGTTCGGCTCATTTGCTTCGCAACAGAGGCGGGGCGCTGATGCCTTGTGTCTGCGCGCGCGTCTGTCAATAAAGTTTTTTCGAATAGCTCAGTTAGCCTATTGGAGAATGGGTAGCATCACTGATGATGAGGTAATTCGGAAGCGTCTTCTGATCGATGGAGATGGAGCTGGAGATGATAGGCGCATTAATGTGCTCATGAAGAGCTTCACCAAATGGTGCCACTCCAATTTCTCACCAGAGGAAGGGTTCTCACAGTATCAGAGGATGTTGACATCTTTGGCTCAATGTGAGTTCTCCATGGGGAAGACCCTGCTCGTGTACAACATGAACCTAAAAGAAATGGAAAATTATGAAGCAATCTATTCAGATATTGAAACAAGTATAACATCAGCCCATGAAAAAATTGCAGAGTGCAAAAAGGAAATCCAGAGAGCGAAAAGGATACGGAAAAACCGCCAAGAGTATGATGCTTTGGCCAGAGTTATCAAGCAACATCCAGACAGACATGAGACCTTAAAGCAGCTTGAGGCTTTAGACAAAGAGCTTCAGCAGCTTTCACACATCAAAGAGAATGTGGACGACAAGGAACTTCAACAGACTTTGGAGAATGATGAGAAGATGGAAAGCGATGATACCCAGGAGAGTCTGATGGAAAATGGAGACTAGACATTTGTATTTTTCCAGTTTTTCTGAGGATGTTCCTGTTATTATTATTATTTCATGAGCACCAGAAGATGTTTTTTCATTTTAGTCTCTCTTTTTTTTGTTGGTCATGTACAGAATTAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K13176 THOC7; THO complex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283976 lncRNA downstream 5335 3853728 ~ 3898562 (-) False G250223
TU283978 lncRNA downstream 5335 3856058 ~ 3898562 (-) True G250223
TU283997 lncRNA downstream 24346 3794644 ~ 3879551 (-) True G250238
TU283977 lncRNA downstream 44913 3853728 ~ 3858984 (-) False G250223
TU283975 lncRNA downstream 45601 3852442 ~ 3858296 (-) False G250223
TU284162 lncRNA upstream 259704 4167812 ~ 4168126 (-) True G250395
TU284090 lncRNA upstream 400049 4308157 ~ 4310100 (-) True G250326
TU284176 lncRNA upstream 428752 4336860 ~ 4337089 (-) True G250409
TU284177 lncRNA upstream 434402 4342510 ~ 4342853 (-) True G250410
TU284072 lncRNA upstream 438621 4346729 ~ 4348920 (-) True G250308
CI01000058_03684461_03827727.mRNA mRNA downstream 76170 3684461 ~ 3827727 (-) False CI01000058_03684461_03827727
CI01000058_03668662_03671701.mRNA mRNA downstream 231712 3668546 ~ 3672185 (-) True CI01000058_03668662_03671701
CI01000058_03239666_03330001.mRNA mRNA downstream 573896 3239666 ~ 3330001 (-) False CI01000058_03239666_03330001
CI01000058_03154548_03160071.mRNA mRNA downstream 743826 3154539 ~ 3160071 (-) True CI01000058_03154548_03160071
CI01000058_03136045_03137264.mRNA mRNA downstream 766633 3135699 ~ 3137264 (-) True CI01000058_03136045_03137264
CI01000058_03950901_03956376.mRNA mRNA upstream 42793 3950901 ~ 3956376 (-) True CI01000058_03950901_03956376
CI01000058_03977379_03991942.mRNA mRNA upstream 68756 3976864 ~ 3991942 (-) True CI01000058_03977379_03991942
CI01000058_04100253_04135812.mRNA mRNA upstream 191605 4099713 ~ 4136508 (-) True CI01000058_04100253_04135812
CI01000058_04178879_04179912.mRNA mRNA upstream 270179 4178287 ~ 4181797 (-) True CI01000058_04178879_04179912
CI01000058_04183820_04207647.mRNA mRNA upstream 275498 4183606 ~ 4207692 (-) True CI01000058_04183820_04207647
TU283989 other downstream 207186 3688643 ~ 3696711 (-) True G250230
TU282944 other downstream 1042704 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU281026 other downstream 3248948 646443 ~ 654949 (-) True G247592

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006664 True 777 mRNA 0.41 8 NC_007122.7 19603251 ~ 19611356 (+)