RNA id: CI01000058_04100253_04135812.mRNA


Basic Information

Item Value
RNA id CI01000058_04100253_04135812.mRNA
length 6249
RNA type mRNA
GC content 0.47
exon number 32
gene id CI01000058_04100253_04135812
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4099713 ~ 4136508 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGGTCTTGGGACAGACTCAAATGCTTAAAAACGTAGACTAAAAAGAGGAAAATGACCATATACAAAGGGTTTTCCTATATGGAAACCTCAGTGGACTTCACCAGTAATGTCATTCTATTCAAGATTATGTTTAAGATCAGGTGTTCAAATTTGCAATGCTCCTTACTTAAAGCTGAAGACTACTTTTTGTATTAAAGTGAACATTAATTAGACTAAGAACTAACTTAGGAGAAAAGCAACTGTGTGCTTATCTAACTGACTGTACATACAGTATAACTGCACAATCTGAAGTTGGAACAAGAACATAACGCAAGTGGATGATCATTATGAGTAATATGTTCAGTGATTTTGAAATGTAGTTTAGTCTGCACGCTACATTATAGCGACACATATGGCAGGAGTGGCTTTCGGAGAGAGGGGTGTCTCTTAGAGTACGCCCAAGTCTCGGCTAAAGTAATCAGCAAACTGTAGACCACCACAGTTGCATCGACCCCCTTTCTGGTATTATGCATGCAAGCCAAGAGGTCCGACCGAGCGCTTGTTAGCGACATGGAAGTCACTTCTGTAAAGTAGAGGAGAAACGCTTTGAATGTGGCAACCGTACGGCAGAAAGTCCGGCTGAGCGTGGCTTCAAGAGACAGCGGAATACTGTATTTGGGCTTGCTTGCATTCATTTTCCTTAACGTGGACAATCATGTTTTTGTTCTTCTGGGGACTAAGCTTTTTTGTATTACTCTCTGATTTTATGAATGCACTAGCTTCAACAGGGAGACCGCGAGACTCAGAGAAAGCGAAATTACCGCAGTTTGGCGCGTATGAGATTGTAACTCCGGCCAGAGTGAATGAAGCCGGTGACAAACTGCCAACGGGCGTGCACTTCAAGAGGAGAAAGCGGAGTACCGACCCAATAACCGGCAACATCTCCCATCATTGGACCTCTCCGCACGTCTATTATCAAATATCTGCCTTTGGGCAGGACTATTACCTTAACCTTACGCTCGAGTCGGGATTTATTGCTCCAGTTTACACTGTCACGATACTCGGAGCATCCAGTGAAGGTCATAATTCAGAAGAGGGGGAGGAGGACACGGAGTATCAGCACTGCTTTTATAAAGGACATGTGAACGCTGGGCAGGAGCATACTGCAGTAATCAGCCTCTGCTCCGGTTTGCTTGGCACTTTCAGGTCACCAGAAGGGGAGTTTTTTGTGGAGCCCCTTCATAGCTACAATGGTGAACATTATGAAGAAGAACACATCAAACCTCATGTCGTGTACAGAAAAGATGCCTCAAAAAAGAGTGTAGATGATCCGACTGCATGTGAAACTTCAGGACATATAGAGCCACTCCGCAGACACAGGAACAGACTGAAGAGAAAGTCGCCCTCAAGCATGTTGTCCGACCTGGAGTCTCTTAATTCCAGACTCTTCTCTGCCCCCTTCCCCTCCTTAGAAAACAAGCACAACTCTGCTAATGAAAGCAGTGACTCCAAGCCACACCGGAGATCAAAGCGTTTCCTCTCCTACCCCCGTTTTGTTGAAGTCATGGTTGTGGCAGACAGCAAGATGGTGGAACATCATGGAAGCAACCTTCAGCACTACATTCTTACACTGATGTCCATAGCCTATGTGAGAGATTGTCAGCATGGGGTGAATATGTCTGACAGACTTGATGAATGTGAATATAAAACAAATAAAATCAGGTATGTTGCATGCACAGCATGCTTTAGATGCTTTTTCGTTGGAGCTCACAGGGAGGTTTCCTCAATCTATAAGGATCCCAGCATTGGAAACCTGATTAACATTGTTATTGTGAAATTGGTCATTATAAAGAATGAGGTGGATGGTCCCACTATCACTTTCAATGCACAAGCCACTTTGAAAAACTTCTGCATATGGCAGCAGAGTCAGAACCACCCGGATGACAACCATCACTCACATCACGACACTGCCATCCTAATCACAAGGCAGGACATCTGTCGAGCACGGGACAAGTGTGACACTTTAGGTCTTGCTGAGCTAGGTACAGTTTGTGATCCCTACAGAAGTTGCAGTATTAATGAGGATAATGGACTCAGTACTGCTTTCACCATTGCTCATGAGCTTGGCCATGTGTTCAACATGCCTCACGATGACAGTAACAAATGCAAGGAGGATGGAGTTAAGAACCAGCAACATGTGATGGCCCCTACGCTCAACTATTACACCAATCCTTGGATGTGGTCCAAATGTAGTCGGAAATACATCACAGAGTTCCTCGAGTATCTCATTTGTTTATCATTTCTCATTAGCACAGGGTATGGGGAGTGTTTGCTCGATGAGCCAGTTTCTAGGCCATACAGTTTGTCCCAGCAGCTGCCTGGACAGATATATAACGTCAATAAACAATGTGAGCTGATATTTGGGCCTGGGACACAGGTGTGTCCATATATGACACAGTGCCGGAGACTGTGGTGCACCAGTCCAGAAGGAGTCCAGCGTGGCTGCCGGACCCAACACATGCCATGGGCTGACGGGACAGAGTGCTCTCCAGGAAAGGCAAGCACTTCAGAAAACTACATTTACAACAACATTCAAAACCCCTCATTTCTTGCGAACACATTTGCATTCTTCGTCATTCTGGTCGGTGTACTTTATAACAAACAAGCAGTCATGACGGATTCTGCAATGATCTCATCTTTTCTGTTTTCTCCTCGCTTGCAGCATTGTAAACATGGCCTGTGCATCCCTAAAGAGCATGATTCTGTTCCAATAGAGGGGGCCTGGGGTGTGTGGAGTCCCTTTGGCACATGCTCAAGGACCTGTGGAGGGGGAATCAAGATTGCGGTGCGCGAGTGCAACCGACCCATGCCCAGAAATGGGGGAAAGTATTGTGTAGGACGAAGGATGAAATTCCGTTCCTGTAACTCTGAGCCATGCTCCAAGCAAAAGAAAGACTTCAGGGAGGAACAGTGTGCCAGCTTTGATGGGCGGCACTTCAACATCAATGGTCTACCTCCAAATGTCCGCTGGGTGCCAAAGTATAGTGGAATTCTGATGAAGGATCGCTGTAAGCTATTCTGTCGTGTAGCGGGCAGCACAGCTTACTACCAACTCAGGGACAGAGTTATTGATGGCACGCAGTGTGGGCCTGACACCAACGACATCTGTGTTCAGGGCCTGTGCAGGCAAGCAGGATGTGACCACGTGTTGAACTCCAAGGCCAGGAGAGATAAGTGTGGGGTGTGTGGTGGGGACAACTCATCTTGCAAGACTGTTGCAGGAACATTCAACATAGTGCATTATGGTTACAATGTTGTGGTGCGAATTCCCAGTGGTGCTACAAACATAGATGTCAGACAACACAGCTACTCAGGGAAACCAGAGGACGATAACTACCTCGCCTTGTCCAACAGCCGTGGAGAATATTTACTCAATGGAGATTTTGTGGTCAGTATGTTTAAAAGGGAAGTCAGAGTGGGGAATGCTGTTATTGAATACAGTGGCTCTGACCATGTCGTTGAGAGAATCAACTGCACTGACCGCATAGAAGAGGAGATTATTATCCAGGTGCTATCCGTAGGAAACCTCTACAACCCTGATGTCAGGTATTCCTACAACATTCCCATAGAAGACAAACCTCAGCAGTTTTTTTGGGATGCGTACGGCCCATGGCAGGATTGCAGTCTTTTGTGCCAAGGAGAGCGCAAGAGGAAGATCTTGTGCAATCGTGAGTCGGATCGAGTGGTGGTGTCTGATCAGCGGTGCCATGGCTCTCCTAAACCAGCTGTGATCACCGAGCCATGCAACACAGACTGTGAACTCAGGTGGTACGTTGCTCGCAAAAGCGAGTGCACAGCCACATGCGGTCTGGGTGTTCGGACTTTGGACATTTACTGCACCAAACAGGGCAGGTTGGATGGAAAGACCCAGAAGGTCGATGATCGGTATTGCAGCAGTCAGCGCAAGCCTGATGACAAGGAAGTGTGCCGTGGAGACTGCAACCCTGGTGGATGGGAGTACTCCTCCTGGTCTGAGTGTTCCAGGAGCTGTGGAGGAGGAACGCGTCGTAGAAGTGCATTATGTGGAAAGTCAGCAGAGGCTGATGACGAAAGCAAGTGCAACCCACAAGAAAAGATCACAGTCCAACCCTGTAATGAGTTCCTGTGTCCTCAGTGGAAAACTGGAGACTGGTCAGAGTGTCTGGTGACATGTGGCAAGGGCTATAAGCACCGCCAGACCTGGTGTCAGTTTGGAGAGGAGCGTTTGGATGACCGTTTCTGTGACTCATCCAAACCAGAGTCAGTACAGGCCTGCCAACAGCAAGAATGTGCGTCCTGGCAGGTGGGACCCTGGGGACAGTGTACCACCACATGCGGCCCAGGCTATCAAATGAGAGCTGTGAAGTGTGTGGTTGGCTCATACGGCTCTGTCATGGATGACACTGAATGTAATGCAGCAACACGTCCAACAGATACTCAGGATTGTGAACTCTCGCAGTGCCCGGTGACTCATCCTGTCATCCCAGAGACCAAAGTGATGTCACATCCTGGTCATAAAACACAGTGGCGCTTTGGATCATGGACACAGTGCAGCGCCACCTGTGGAAAGGGCACCCGGATGCGCTACGTAAGTTGCCGTGACCAGCAGGGTGGAGTAGCAGAGGAATCAGCCTGCGCTCATCTTACAAAACCTCCTGCTAGTGAGGTGTGCTCCATAGTGGCGTGTGGACAGTGGAAGGTTCTAGAATGGACTGCGTGTTTAGAGCTCAGTTGTAATTGGAAACTGATTGAGAGTTCATTTTGTGTGGGTCTTGTGTGCAGATGGGGTTCGGGTACAACTACACGGCAAGTGGTGTGTATGAACATCAGCGATCAAGTTGTGGAAATGAGTGAGTGTGACCCAGATGATCAACCAGCAACAGAGCAGGAGTGTGCCATGCCCCAGTGTCCGTCTCGCTCCAGCGACCACGGGGGCTTTTTACCTAACCCTGATTCTCGGAAAAAAAATGTTCCCATCGGACGAACTGACCGTAACAGAGCTGGCAGACCCCAGTCGCATCAATGGAGGACTGGACCATGGGGGGCGTGTTCAAGTACCTGTGCCGGAGGATTCCAGAGGCGTGTGGTGGTGTGTCAGGATGAGAACGGCTACCCTGCCAACAGCTGTGATGAAAGCACACAACCCACAGAGCAACGCTCCTGTGAATCCGGCCCCTGCCCTCAGTGGGTCTATGGCAGCTGGAGTGAGTGTTCAAAATCCTGCGGAGGAGGGATAAAGACCCGGTTGGTCACTTGTCAGCGGCCCAACGGGGAGCGCTTTAACGATCTGAGCTGTGAAATTCTTGACAAACCACCCGACCGAGAACAGTGCAATACTCAGTCCTGCTCTATTAACCCTCACTGGATCACAGACCAATGGAGCTCGCACCGTAACAATACAAATTTGTATTTTTTCCAAATACACCATGGTGCTATAGTGTCTATGGTGCAATTCCCTTTCATGACATGGTCTGTTAATGTCACCAGACTGAAAATTAAGTGGTTTAAATCAAATGGCAGTATTGATGAAGTACCTGTAGAGGAACTCTACTACCGTAGGCTTTTTCGTTTTGGACACCACAGGATATTAACCAGCCCTGATGGTAGTGATATGGTCACAGTCAACCAAGTGAGCATACATCAAAATAACAATGGCAAAGGCACAGGGGGGGTCAAGGACAGCCTTTGATCTGTTGGAAGGTCTTTCCCAGCCTTCCCAGCTCATCTAATCAGAATGGACACACTTCTCAGAAAGAGTTTTATTCTTATGGGAAAAATAAGAGGCAAGAGCGAAGGCCATTACGGAACACGGAGGCCTCTACGGCCTGGATATCTGTGTGCATTCTGAAACCTGGAAGTTCTCACGTTGGAATGTAGTGAGGCACGTAGCCAAGCATTTTGCCAGGCCTGGACTGATCATTTTTGGCAACAATTTAAAAGAAAAACAAGGTGATTTTGCATGGTCCAAAAAGCAAAAAAAAAAAAAAAAAAGTCAATTTAGTCTGATCAATGAACTGAAGAGTAACTACAATTACACTTATCTGTTTTGATTGCATTCAGATTGGAATTGGAATATTTCTCTAGATTTTGGATGAAAGAAATTTTAAAGTAAATGCCCCTTTATTTTGGATCTTTTTTAGTGTAAAAGTTGGCAATTTTTGCTCATTAAATCAGTGGCGCATTCATTTAACAAAGTACATAAATAGTATGGCAGCATGACTGAAATAAA

Function

GO:

id name namespace
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K08624 ADAMTS9; a disintegrin and metalloproteinase with thrombospondin motifs 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283976 lncRNA downstream 201151 3853728 ~ 3898562 (-) False G250223
TU283978 lncRNA downstream 201151 3856058 ~ 3898562 (-) True G250223
TU283977 lncRNA downstream 240729 3853728 ~ 3858984 (-) False G250223
TU283975 lncRNA downstream 241417 3852442 ~ 3858296 (-) False G250223
TU283986 lncRNA downstream 248384 3839079 ~ 3851329 (-) True G250227
TU284162 lncRNA upstream 31304 4167812 ~ 4168126 (-) True G250395
TU284090 lncRNA upstream 171649 4308157 ~ 4310100 (-) True G250326
TU284176 lncRNA upstream 200352 4336860 ~ 4337089 (-) True G250409
TU284177 lncRNA upstream 206002 4342510 ~ 4342853 (-) True G250410
TU284072 lncRNA upstream 210221 4346729 ~ 4348920 (-) True G250308
CI01000058_03977379_03991942.mRNA mRNA downstream 107771 3976864 ~ 3991942 (-) True CI01000058_03977379_03991942
CI01000058_03950901_03956376.mRNA mRNA downstream 143337 3950901 ~ 3956376 (-) True CI01000058_03950901_03956376
CI01000058_03904018_03906800.mRNA mRNA downstream 191605 3903897 ~ 3908108 (-) True CI01000058_03904018_03906800
CI01000058_03684461_03827727.mRNA mRNA downstream 271986 3684461 ~ 3827727 (-) False CI01000058_03684461_03827727
CI01000058_03668662_03671701.mRNA mRNA downstream 427528 3668546 ~ 3672185 (-) True CI01000058_03668662_03671701
CI01000058_04178879_04179912.mRNA mRNA upstream 41779 4178287 ~ 4181797 (-) True CI01000058_04178879_04179912
CI01000058_04183820_04207647.mRNA mRNA upstream 47098 4183606 ~ 4207692 (-) True CI01000058_04183820_04207647
CI01000058_04211165_04255297.mRNA mRNA upstream 74371 4210879 ~ 4255536 (-) True CI01000058_04211165_04255297
CI01000058_04276892_04277098.mRNA mRNA upstream 140093 4276601 ~ 4277545 (-) True CI01000058_04276892_04277098
CI01000058_04321968_04325974.mRNA mRNA upstream 183973 4320481 ~ 4326404 (-) True CI01000058_04321968_04325974
TU283989 other downstream 403002 3688643 ~ 3696711 (-) True G250230
TU282944 other downstream 1238520 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU281026 other downstream 3444764 646443 ~ 654949 (-) True G247592

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006657 True 4386 mRNA 0.51 30 NC_007122.7 19159083 ~ 19227802 (+)
bowfin (Amia calva) AMCG00017142 True 5876 mRNA 0.48 39 CM030122.1 48012012 ~ 48062227 (+)