CI01000058_04100253_04135812 (ADAMTS9)


Basic Information

Item Value
gene id CI01000058_04100253_04135812
gene name ADAMTS9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4099713 ~ 4136508 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_04100253_04135812.mRNA
ATAGGTCTTGGGACAGACTCAAATGCTTAAAAACGTAGACTAAAAAGAGGAAAATGACCATATACAAAGGGTTTTCCTATATGGAAACCTCAGTGGACTTCACCAGTAATGTCATTCTATTCAAGATTATGTTTAAGATCAGGTGTTCAAATTTGCAATGCTCCTTACTTAAAGCTGAAGACTACTTTTTGTATTAAAGTGAACATTAATTAGACTAAGAACTAACTTAGGAGAAAAGCAACTGTGTGCTTATCTAACTGACTGTACATACAGTATAACTGCACAATCTGAAGTTGGAACAAGAACATAACGCAAGTGGATGATCATTATGAGTAATATGTTCAGTGATTTTGAAATGTAGTTTAGTCTGCACGCTACATTATAGCGACACATATGGCAGGAGTGGCTTTCGGAGAGAGGGGTGTCTCTTAGAGTACGCCCAAGTCTCGGCTAAAGTAATCAGCAAACTGTAGACCACCACAGTTGCATCGACCCCCTTTCTGGTATTATGCATGCAAGCCAAGAGGTCCGACCGAGCGCTTGTTAGCGACATGGAAGTCACTTCTGTAAAGTAGAGGAGAAACGCTTTGAATGTGGCAACCGTACGGCAGAAAGTCCGGCTGAGCGTGGCTTCAAGAGACAGCGGAATACTGTATTTGGGCTTGCTTGCATTCATTTTCCTTAACGTGGACAATCATGTTTTTGTTCTTCTGGGGACTAAGCTTTTTTGTATTACTCTCTGATTTTATGAATGCACTAGCTTCAACAGGGAGACCGCGAGACTCAGAGAAAGCGAAATTACCGCAGTTTGGCGCGTATGAGATTGTAACTCCGGCCAGAGTGAATGAAGCCGGTGACAAACTGCCAACGGGCGTGCACTTCAAGAGGAGAAAGCGGAGTACCGACCCAATAACCGGCAACATCTCCCATCATTGGACCTCTCCGCACGTCTATTATCAAATATCTGCCTTTGGGCAGGACTATTACCTTAACCTTACGCTCGAGTCGGGATTTATTGCTCCAGTTTACACTGTCACGATACTCGGAGCATCCAGTGAAGGTCATAATTCAGAAGAGGGGGAGGAGGACACGGAGTATCAGCACTGCTTTTATAAAGGACATGTGAACGCTGGGCAGGAGCATACTGCAGTAATCAGCCTCTGCTCCGGTTTGCTTGGCACTTTCAGGTCACCAGAAGGGGAGTTTTTTGTGGAGCCCCTTCATAGCTACAATGGTGAACATTATGAAGAAGAACACATCAAACCTCATGTCGTGTACAGAAAAGATGCCTCAAAAAAGAGTGTAGATGATCCGACTGCATGTGAAACTTCAGGACATATAGAGCCACTCCGCAGACACAGGAACAGACTGAAGAGAAAGTCGCCCTCAAGCATGTTGTCCGACCTGGAGTCTCTTAATTCCAGACTCTTCTCTGCCCCCTTCCCCTCCTTAGAAAACAAGCACAACTCTGCTAATGAAAGCAGTGACTCCAAGCCACACCGGAGATCAAAGCGTTTCCTCTCCTACCCCCGTTTTGTTGAAGTCATGGTTGTGGCAGACAGCAAGATGGTGGAACATCATGGAAGCAACCTTCAGCACTACATTCTTACACTGATGTCCATAGCCTATGTGAGAGATTGTCAGCATGGGGTGAATATGTCTGACAGACTTGATGAATGTGAATATAAAACAAATAAAATCAGGTATGTTGCATGCACAGCATGCTTTAGATGCTTTTTCGTTGGAGCTCACAGGGAGGTTTCCTCAATCTATAAGGATCCCAGCATTGGAAACCTGATTAACATTGTTATTGTGAAATTGGTCATTATAAAGAATGAGGTGGATGGTCCCACTATCACTTTCAATGCACAAGCCACTTTGAAAAACTTCTGCATATGGCAGCAGAGTCAGAACCACCCGGATGACAACCATCACTCACATCACGACACTGCCATCCTAATCACAAGGCAGGACATCTGTCGAGCACGGGACAAGTGTGACACTTTAGGTCTTGCTGAGCTAGGTACAGTTTGTGATCCCTACAGAAGTTGCAGTATTAATGAGGATAATGGACTCAGTACTGCTTTCACCATTGCTCATGAGCTTGGCCATGTGTTCAACATGCCTCACGATGACAGTAACAAATGCAAGGAGGATGGAGTTAAGAACCAGCAACATGTGATGGCCCCTACGCTCAACTATTACACCAATCCTTGGATGTGGTCCAAATGTAGTCGGAAATACATCACAGAGTTCCTCGAGTATCTCATTTGTTTATCATTTCTCATTAGCACAGGGTATGGGGAGTGTTTGCTCGATGAGCCAGTTTCTAGGCCATACAGTTTGTCCCAGCAGCTGCCTGGACAGATATATAACGTCAATAAACAATGTGAGCTGATATTTGGGCCTGGGACACAGGTGTGTCCATATATGACACAGTGCCGGAGACTGTGGTGCACCAGTCCAGAAGGAGTCCAGCGTGGCTGCCGGACCCAACACATGCCATGGGCTGACGGGACAGAGTGCTCTCCAGGAAAGGCAAGCACTTCAGAAAACTACATTTACAACAACATTCAAAACCCCTCATTTCTTGCGAACACATTTGCATTCTTCGTCATTCTGGTCGGTGTACTTTATAACAAACAAGCAGTCATGACGGATTCTGCAATGATCTCATCTTTTCTGTTTTCTCCTCGCTTGCAGCATTGTAAACATGGCCTGTGCATCCCTAAAGAGCATGATTCTGTTCCAATAGAGGGGGCCTGGGGTGTGTGGAGTCCCTTTGGCACATGCTCAAGGACCTGTGGAGGGGGAATCAAGATTGCGGTGCGCGAGTGCAACCGACCCATGCCCAGAAATGGGGGAAAGTATTGTGTAGGACGAAGGATGAAATTCCGTTCCTGTAACTCTGAGCCATGCTCCAAGCAAAAGAAAGACTTCAGGGAGGAACAGTGTGCCAGCTTTGATGGGCGGCACTTCAACATCAATGGTCTACCTCCAAATGTCCGCTGGGTGCCAAAGTATAGTGGAATTCTGATGAAGGATCGCTGTAAGCTATTCTGTCGTGTAGCGGGCAGCACAGCTTACTACCAACTCAGGGACAGAGTTATTGATGGCACGCAGTGTGGGCCTGACACCAACGACATCTGTGTTCAGGGCCTGTGCAGGCAAGCAGGATGTGACCACGTGTTGAACTCCAAGGCCAGGAGAGATAAGTGTGGGGTGTGTGGTGGGGACAACTCATCTTGCAAGACTGTTGCAGGAACATTCAACATAGTGCATTATGGTTACAATGTTGTGGTGCGAATTCCCAGTGGTGCTACAAACATAGATGTCAGACAACACAGCTACTCAGGGAAACCAGAGGACGATAACTACCTCGCCTTGTCCAACAGCCGTGGAGAATATTTACTCAATGGAGATTTTGTGGTCAGTATGTTTAAAAGGGAAGTCAGAGTGGGGAATGCTGTTATTGAATACAGTGGCTCTGACCATGTCGTTGAGAGAATCAACTGCACTGACCGCATAGAAGAGGAGATTATTATCCAGGTGCTATCCGTAGGAAACCTCTACAACCCTGATGTCAGGTATTCCTACAACATTCCCATAGAAGACAAACCTCAGCAGTTTTTTTGGGATGCGTACGGCCCATGGCAGGATTGCAGTCTTTTGTGCCAAGGAGAGCGCAAGAGGAAGATCTTGTGCAATCGTGAGTCGGATCGAGTGGTGGTGTCTGATCAGCGGTGCCATGGCTCTCCTAAACCAGCTGTGATCACCGAGCCATGCAACACAGACTGTGAACTCAGGTGGTACGTTGCTCGCAAAAGCGAGTGCACAGCCACATGCGGTCTGGGTGTTCGGACTTTGGACATTTACTGCACCAAACAGGGCAGGTTGGATGGAAAGACCCAGAAGGTCGATGATCGGTATTGCAGCAGTCAGCGCAAGCCTGATGACAAGGAAGTGTGCCGTGGAGACTGCAACCCTGGTGGATGGGAGTACTCCTCCTGGTCTGAGTGTTCCAGGAGCTGTGGAGGAGGAACGCGTCGTAGAAGTGCATTATGTGGAAAGTCAGCAGAGGCTGATGACGAAAGCAAGTGCAACCCACAAGAAAAGATCACAGTCCAACCCTGTAATGAGTTCCTGTGTCCTCAGTGGAAAACTGGAGACTGGTCAGAGTGTCTGGTGACATGTGGCAAGGGCTATAAGCACCGCCAGACCTGGTGTCAGTTTGGAGAGGAGCGTTTGGATGACCGTTTCTGTGACTCATCCAAACCAGAGTCAGTACAGGCCTGCCAACAGCAAGAATGTGCGTCCTGGCAGGTGGGACCCTGGGGACAGTGTACCACCACATGCGGCCCAGGCTATCAAATGAGAGCTGTGAAGTGTGTGGTTGGCTCATACGGCTCTGTCATGGATGACACTGAATGTAATGCAGCAACACGTCCAACAGATACTCAGGATTGTGAACTCTCGCAGTGCCCGGTGACTCATCCTGTCATCCCAGAGACCAAAGTGATGTCACATCCTGGTCATAAAACACAGTGGCGCTTTGGATCATGGACACAGTGCAGCGCCACCTGTGGAAAGGGCACCCGGATGCGCTACGTAAGTTGCCGTGACCAGCAGGGTGGAGTAGCAGAGGAATCAGCCTGCGCTCATCTTACAAAACCTCCTGCTAGTGAGGTGTGCTCCATAGTGGCGTGTGGACAGTGGAAGGTTCTAGAATGGACTGCGTGTTTAGAGCTCAGTTGTAATTGGAAACTGATTGAGAGTTCATTTTGTGTGGGTCTTGTGTGCAGATGGGGTTCGGGTACAACTACACGGCAAGTGGTGTGTATGAACATCAGCGATCAAGTTGTGGAAATGAGTGAGTGTGACCCAGATGATCAACCAGCAACAGAGCAGGAGTGTGCCATGCCCCAGTGTCCGTCTCGCTCCAGCGACCACGGGGGCTTTTTACCTAACCCTGATTCTCGGAAAAAAAATGTTCCCATCGGACGAACTGACCGTAACAGAGCTGGCAGACCCCAGTCGCATCAATGGAGGACTGGACCATGGGGGGCGTGTTCAAGTACCTGTGCCGGAGGATTCCAGAGGCGTGTGGTGGTGTGTCAGGATGAGAACGGCTACCCTGCCAACAGCTGTGATGAAAGCACACAACCCACAGAGCAACGCTCCTGTGAATCCGGCCCCTGCCCTCAGTGGGTCTATGGCAGCTGGAGTGAGTGTTCAAAATCCTGCGGAGGAGGGATAAAGACCCGGTTGGTCACTTGTCAGCGGCCCAACGGGGAGCGCTTTAACGATCTGAGCTGTGAAATTCTTGACAAACCACCCGACCGAGAACAGTGCAATACTCAGTCCTGCTCTATTAACCCTCACTGGATCACAGACCAATGGAGCTCGCACCGTAACAATACAAATTTGTATTTTTTCCAAATACACCATGGTGCTATAGTGTCTATGGTGCAATTCCCTTTCATGACATGGTCTGTTAATGTCACCAGACTGAAAATTAAGTGGTTTAAATCAAATGGCAGTATTGATGAAGTACCTGTAGAGGAACTCTACTACCGTAGGCTTTTTCGTTTTGGACACCACAGGATATTAACCAGCCCTGATGGTAGTGATATGGTCACAGTCAACCAAGTGAGCATACATCAAAATAACAATGGCAAAGGCACAGGGGGGGTCAAGGACAGCCTTTGATCTGTTGGAAGGTCTTTCCCAGCCTTCCCAGCTCATCTAATCAGAATGGACACACTTCTCAGAAAGAGTTTTATTCTTATGGGAAAAATAAGAGGCAAGAGCGAAGGCCATTACGGAACACGGAGGCCTCTACGGCCTGGATATCTGTGTGCATTCTGAAACCTGGAAGTTCTCACGTTGGAATGTAGTGAGGCACGTAGCCAAGCATTTTGCCAGGCCTGGACTGATCATTTTTGGCAACAATTTAAAAGAAAAACAAGGTGATTTTGCATGGTCCAAAAAGCAAAAAAAAAAAAAAAAAAGTCAATTTAGTCTGATCAATGAACTGAAGAGTAACTACAATTACACTTATCTGTTTTGATTGCATTCAGATTGGAATTGGAATATTTCTCTAGATTTTGGATGAAAGAAATTTTAAAGTAAATGCCCCTTTATTTTGGATCTTTTTTAGTGTAAAAGTTGGCAATTTTTGCTCATTAAATCAGTGGCGCATTCATTTAACAAAGTACATAAATAGTATGGCAGCATGACTGAAATAAA

Function

symbol description
adamts9 Predicted to enable metalloendopeptidase activity. Acts upstream of or within endocrine pancreas development and pancreas regeneration. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; gonad; immune system; lepidotrichium; and nervous system. Used to study scoliosis. Orthologous to human ADAMTS9 (ADAM metallopeptidase with thrombospondin type 1 motif 9).

GO:

id name namespace
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K08624 ADAMTS9; a disintegrin and metalloproteinase with thrombospondin motifs 9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_04100253_04135812.mRNA True 6249 mRNA 0.47 32 4099713 4136508

Neighbor

gene id symbol gene type direction distance location
CI01000058_03977379_03991942 PRICKLE2, PRICKLE2B coding downstream 107771 3976864 ~ 3991942 (-)
CI01000058_03950901_03956376 PSMD6 coding downstream 143337 3950901 ~ 3956376 (-)
CI01000058_03904018_03906800 THOC7 coding downstream 191605 3903897 ~ 3908108 (-)
CI01000058_03684461_03827727 CADPS, CADPSA coding downstream 271986 3684461 ~ 3827727 (-)
CI01000058_03668662_03671701 FEZF2 coding downstream 427528 3668546 ~ 3672185 (-)
CI01000058_04178879_04179912 NA coding upstream 41779 4178287 ~ 4181797 (-)
CI01000058_04183820_04207647 MAGI1B, MAGI1 coding upstream 47098 4183606 ~ 4207692 (-)
CI01000058_04211165_04255297 NA coding upstream 74371 4210879 ~ 4255536 (-)
CI01000058_04276892_04277098 NA coding upstream 140093 4276601 ~ 4277545 (-)
CI01000058_04321968_04325974 NA coding upstream 183973 4320481 ~ 4326404 (-)
G250223 NA non-coding downstream 201151 3852442 ~ 3898562 (-)
G250238 NA non-coding downstream 220162 3794644 ~ 3879551 (-)
G250227 NA non-coding downstream 248384 3839079 ~ 3851329 (-)
G250231 NA non-coding downstream 260781 3835057 ~ 3838932 (-)
G250395 NA non-coding upstream 31304 4167812 ~ 4168126 (-)
G250326 NA non-coding upstream 171649 4308157 ~ 4310100 (-)
G250409 NA non-coding upstream 200352 4336860 ~ 4337089 (-)
G250410 NA non-coding upstream 206002 4342510 ~ 4342853 (-)
G250308 NA non-coding upstream 210221 4346729 ~ 4348920 (-)
G250230 NA other downstream 403002 3688643 ~ 3696711 (-)
CI01000058_02859435_02860658 FAM72A other downstream 1238520 2858483 ~ 2861491 (-)
G247592 NA other downstream 3444764 646443 ~ 654949 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003397 adamts9 coding NC_007122.7 CM002895.2 19157879 ~ 19227802 (+)
bowfin (Amia calva) AMCG00017142 NA coding CM030122.1 CM030122.1 48012012 ~ 48062227 (+)