CI01000058_03977379_03991942 (PRICKLE2, PRICKLE2B)


Basic Information

Item Value
gene id CI01000058_03977379_03991942
gene name PRICKLE2, PRICKLE2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3976864 ~ 3991942 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_03977379_03991942.mRNA
GAAGATCTGCCTCCACTGTAAGTGCCCTCGTGAGGAGCATGTTGTGACCGTCATGCCTCTAGAGATGGAGAAGACAGTGACCAAGCTGATGTACGACTTCCAGAGGAACTCTACATCCGACGATGACTCAGGCTGTGCTCTAGAGGAGTATGCCTGGGTGCCACCCGGACTCAAACCTGAACAGTTATTTCCACAAGCTGTTCCTCTGTGTGAGTGCTTTAGGCTCTGGGTCCATGTCCTTCTGATCGCTGCGTCACAACAGTTCTTTTGCTGGCCCAGGGAGCGTGTTATTGTTGGATGTCTCCACTGTAATTTACCAGGACCAGACCACAGTTGGTGTTTCATGAAATTTTTTAGCTATCCCAAAAGAACCTCTGCACAAGTCCTTCAAAAACCCCTTGCTGACACTGTACCGGCCAACACAAGCAACAGAAGAGCAATCAGCTCGTTTAAAGAGACAGCTCCTTATTACAGGGAGGCTTTAAACACCGGACATGGACGGGGCTCTGAAAACAAAGCCCACACATTACAGAGGAAGGTACATCAGTATTACAGCTCTTTGCCGGAGGATAAAGTACCATACGTGAACAGTCCTGGGGAGAAGCATCGCATCAAACAGCTTCTGCATCAACTTCCCCCACATGACAATGAGGTGCGATACTGTAACAGTCTGGATGATGAGGAAAAACGAGAGCTGAAGCTCTTCAGCAACCAGAGGAAGAGGGAGAACCTGGGCCGCGGTAACGTCAGGCCCTTCCCGGTGACCATGACTGGAGCTATCTGTGAACAGTGTGGGGGACAGATAAACGGAGGTGACATTGCCGTCTTTGCGTCACGGGCGGGCCACGGAGTTTGCTGGCACCCACAATGCTTCGTGTGCAGCATGTGCGATGAGCTACTGGTGGATCTTATCTACTTCTACCAAGACGGGAAGATCTTCTGTGGTCGCCACCATGCTGAGAGACTCAAACCTCGTTGTTCAGCCTGTGATGAGATCATTTTTGCAGATGAGTGCACAGAGGCAGAGGGCAGGCACTGGCACATGAAGCACTTTTGCTGTTTCGAGTGCGAGACAGTTCTGGGCGGCCAGCGTTACATCATGAAAGAGGGCCGGCCGTACTGCTGCACCTGCTTTGAGTCCCTGTATGCAGAGTACTGCGATTCCTGCGGGGAACACATCGGTATTGACCAGGGTCAGATGACATACGATGGCCAGCACTGGCATGCCACCGAGGCCTGTTTTAGCTGTGCTCGCTGTAAGAAGTCCCTGCTCGGTCGTCCTTTTCTACCCAAGCAGGGTCAGATCTTCTGCTCTCGAGCATGTAGCATTGGCGATGACCAAAACGGCTCTGATTCCTCAGATTCTGCATTCCAGAGCGCCCGTTCTCGTGAGGCCCGGCGCAGCAGCTCCAAATCCAACAAGAGCAATAATGTTGGTAGTGGAGGAGACGGGAACCAGGGAGGAAAAGGTTCAGCTGGGCGTTATTCTGCTGATGTTGACCCACTGTCCCTGCAAATGGACTTGCTTAGCCTGTCCAGTCAAACGCCCAGTCTGAACAGAGAATCTCCATCTTGGAAGACGCAGGCTGAGATGTATGGGTACGAGAGCCGCAATGAACTCTCTTCAAACCCTCTGCATTTGCTTAGTCAATGCAACATCCGGACTTCCTATTCCTCAAATCTGTCCCCTGGTCACCCAGCAGATCCAAGGCCCAAGGAGCCTGTGGCCTCCAAGAGACCCCCTGTATCTGCTCTCAAAGGACAGTCTTTGAATGAGAACTGGTTCCAACCAGGACCAGAGGACTATTACCAACCTGCACTGCGAACACAGACGAGCTTTAAAGAGGTTCCACACAACAGCTTCATGGATAAGCGCTCAGTGAGCCTGCATGTATTCCAGAGGGAGAAGGAGAAGGATGTTGGACCGCAGATGGGCCGTAGCAGGAACCCAATTAGCACCTCTGCAGATGGCGACAGTAAACGGCAGGAGCATTTGTCTCGCTTCTCAATGCCAGACTTGAGCAAAGATTCTGGCATGAACGTGTCTGAAAAAAGCAACATGGGCACCCTCAACTCCTCTGTGCAGTTCCACAGCTCTGAATCTCTGCGTAGCCTGAACTCCGCACAGCCCTACCTGGAGCTTGAAGCCCCGGTGCAAGTCAAATACCCTGTGCAATACCCCCGTGAACCTCCTGGAATTAATGCTTTACCGCCTGGATTTGCCTATCAGGAGGAGGATCGCGCAAGTTTGGTAAGCAACGCCAACAACGCCCGTCTACCACCCATGAGTGAACGGACCCGCCGTAGAAGCATCGACCACGAAGAGCCACGGCGTCGACACCACCACCATCGCTCTCGCCGTTCCAGGCGTTCCCGTTCGGAAAACGCACTTAACCTTGCTGCCGAGCGCCGCCCGCCTCCAAAACGATCTCAACTTCATGTCCGTGAGGATTATGACCAGTTCCCTCCGCCCCGTGGGTCACGGGACCACTACGGAAGTGGAAGTGGCAGGCTGAGACAGCAGCCTTTCAGACCTTGCCCTCGGACAACCTCTGACCTCACGCTTCAAAACCCCGCGCTACACCGACACCAGGGCCCTTATTCATGGGACCAGTACGATTACGATGACGATTGGTGCTCGACCTGTTCCTCATCTTCTGAGTCAGAAGATGAAGGGTATTTTCTGGGCGAGCCAATTCCCAGACCGGTCCAGCTGAGGTACATGACCAGCGAAGAGCTGCTGCGCAAATACAACTCTTCAGGACTCGGCGCATCCGGTCAGTTCGGGAGCCGAGGACAGTTACACACTCGCAAACGTAGGAAAAGCAAGAACTGCATTATCTCCTAAAAGTCACATCTGCATCACGCACAACCTTGCACAAGATTTTTTTCCGTCAGTATAGTTTAAAAGGCTTTTCGGTGTTGTGAGGCTATCAGTGACTAATACGCAGTAATTTAATTTGTTCAAGGCTCAATTGCATATGCATGCTTTCTCATGTGATATTTACAAATTATTCTGGATGTTACACTTTTTTTAGGGACTTCTTAAATTCGCAGCACTGTTGCCACATTTGTTACAACTAATGTGCAATTTTTCGTTATGTAATCCATTCAGGCACAGTGATGGTTTTTTTTGTATGGTGTTTGCTTTGGGCTGAAAATCCCATTAATAAGATGTATATAGGCAACTGAATGAAGAAATTTACTAAGTTAAGGATGTAATGTAAATTATCTGTAAATGATGTACCACATATTTTTATATTTTGTATCAATAGAATCATTTATGTACTAAGCAAAATGTAGAGAAAATAGTAAAGGCATGCACGTTAATTTGCTGATTTTTGTCCTGTATTGGAAATTAAA

Function

symbol description
prickle2b Predicted to enable zinc ion binding activity. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and neural retina development. Is expressed in several structures, including anterior neural keel; immature eye; mesoderm; nervous system; and neural tube. Orthologous to human PRICKLE2 (prickle planar cell polarity protein 2).
prickle2 Predicted to enable zinc ion binding activity. Predicted to act upstream of or within several processes, including establishment or maintenance of epithelial cell apical/basal polarity; neuron projection development; and trophectodermal cell fate commitment. Located in cytoplasm.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K04511 PRICKLE; prickle

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_03977379_03991942.mRNA True 3363 mRNA 0.50 8 3976864 3991942

Neighbor

gene id symbol gene type direction distance location
CI01000058_03950901_03956376 PSMD6 coding downstream 20488 3950901 ~ 3956376 (-)
CI01000058_03904018_03906800 THOC7 coding downstream 68756 3903897 ~ 3908108 (-)
CI01000058_03684461_03827727 CADPS, CADPSA coding downstream 149137 3684461 ~ 3827727 (-)
CI01000058_03668662_03671701 FEZF2 coding downstream 304679 3668546 ~ 3672185 (-)
CI01000058_03239666_03330001 CDH4 coding downstream 646863 3239666 ~ 3330003 (-)
CI01000058_04100253_04135812 ADAMTS9 coding upstream 107771 4099713 ~ 4136508 (-)
CI01000058_04178879_04179912 NA coding upstream 186345 4178287 ~ 4181797 (-)
CI01000058_04183820_04207647 MAGI1B, MAGI1 coding upstream 191664 4183606 ~ 4207692 (-)
CI01000058_04211165_04255297 NA coding upstream 218937 4210879 ~ 4255536 (-)
CI01000058_04276892_04277098 NA coding upstream 284659 4276601 ~ 4277545 (-)
G250223 NA non-coding downstream 78302 3852442 ~ 3898562 (-)
G250238 NA non-coding downstream 97313 3794644 ~ 3879551 (-)
G250227 NA non-coding downstream 125535 3839079 ~ 3851329 (-)
G250231 NA non-coding downstream 137932 3835057 ~ 3838932 (-)
G250395 NA non-coding upstream 175870 4167812 ~ 4168126 (-)
G250326 NA non-coding upstream 316215 4308157 ~ 4310100 (-)
G250409 NA non-coding upstream 344918 4336860 ~ 4337089 (-)
G250410 NA non-coding upstream 350568 4342510 ~ 4342853 (-)
G250308 NA non-coding upstream 354787 4346729 ~ 4348920 (-)
G250230 NA other downstream 280153 3688643 ~ 3696711 (-)
CI01000058_02859435_02860658 FAM72A other downstream 1115671 2858483 ~ 2861491 (-)
G247592 NA other downstream 3321915 646443 ~ 654949 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003398 prickle2b coding NC_007122.7 CM002895.2 19271557 ~ 19471758 (+)