RNA id: TU284090



Basic Information


Item Value
RNA id TU284090
length 1920
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G250326
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4308157 ~ 4310100 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCTAACACTAAATGTGGCTGAATGTAACTTAACTGAATAAAATCATCTTCCTGATGTTGTTATTTATTAAAACCGCCATAAACCATGACCATGGGGTCAAAGAAGTTTTGTTAATTTTTAAACTAGTTTGCATTTGAAGATCTTTTTCTTAAGAAACTCTTAATGCTGCATTTTAATTCCCTAAATGATCATTTGACCCTTTGGTACACCAGATGAATGTAGTGATTGTTTCACATTTATGTTTTGTAAGTTACTTCAGTCCTCATAAAAGGGTCAAGCATAATTAAAATCGCTAACATATTAATGAGAGCTTTTGTTAATACTCTAGTGGGAGGAGAAGCAGGATCTGGACATTAGCATATTAACAGTGCATAATTTCCTGCAGAAAGTTTTTTTTTCTTAGTAATTCCTCCTAAGTGATCATATCATAAGAAGAACATCTCTGCATTTAGAATCCAGAAGGTTCCGGACTGTAAAAGACAACAGCACCACCATTACATCAGCACAAAATCTCTTGTAAAGCCACCCGAGTGGAGGCTCATATATTGATGTGAGGAGTGGACAGTCATTGGTCACATGATTTGAGGCTTTATGGCCCACCAGAGGGTCCTAATGGACTGTTTGATTGATGTCAAACAGCCTTTCCTTTAGTAAGCCTTGGCCAGCGATTCTCAATGTTGTACAGTGTCTCATGTAATAACACGGAATACCACACACAATTATAATTGTAAATGATACAATAAAAAAAATGTTGTTATTGGTGCATCTCTAACTTTGAATGTACCATTGAGTAGACAAGACAAAAATGGATTTTAATATGTGGATAGATTAATTTACTTGTTTTGAAACCAAAAATAAGTGATAGCTAGATGTGCAGTGTGACACCACTGGAGGCGGCTTCCATTTTGTGCACCAACCGCTGCTGTGAATCCAGTGGTGGACTGTAGACATCCAAACAGTGATGTCATGCCTTTCAAACACAAACAGCCCTATTGTAAAGCAGAGCTGAGAAAATTATATTATGTTGAACTTCCTTTCTCATGCCTCCACCATGAATTTGTAGTGCTTTTAATTGTGTCCCATGCAAGAAGGTTTTTTTTAATGTTTTTTGTGAGTGAGACGGTTTTGTAGGGTTACATTTCATTTAAATTAAGAACTAGCGTCCAAACACACAAAATGCTTTTACTACTATAAGGTATGAGGCCATTGTTTGCATGACAGTTTTGACCTTTAGATGTTGTTGTAGTATTTACTCAATGCAGATGACTCTAGGGTGGATTCCAGTAGGCCAGTGTAACGGAGGCAGCAGCAACACTCGTTTGAACCGGAGGAGGCCGGTCAGCCACCCGCTGTGTGTTTCCCCTCTCTGATACGGCAGCAGGATGTGTGCAGTAAGCCTTTTCATCCCTTCACTGGGCATGTCTGTCTGCCTGCCGCCCGCTCTGTCGGCTCTGTGGAGCATGAATCAAATATGTGCAGTCATAGTGTGTGTTGTGAGCAGCGCAGGGCGGCTTTTCCCTGAATACCAGAGGCAGAAATGTTTAGTTTACCTGTCCCGCTGAGGTTTCCTTCCCCAAATGGCTGTGTTTGTTGACCTGAGTTCATTTAGAGCTGTTCTGAGCCCCAATAGAGCTGTGTTTGTTTTCATATGGTGACTTTGTAACAGCGACACAAGGCTCTCTTCCAGCCTCTGTCTGTAATGAGTCACATGCTGCTGTCTGCCTGGAGATACCCATGTGTCCATCTCCTTATTACAGAAGGCTTTCTTTTTTTCTTTCTTTCTTTCTTTCTTGTGCGCTTTCTTTCTTTTGCTTTCTTTTGCTTTTTCTATCTTTCGCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTGTGCGCTTTCTTTCTTTCTTTTGCTTTCTATCTTTCGCTCTTTCTTTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU284162 lncRNA downstream 140031 4167812 ~ 4168126 (-) True G250395
TU283976 lncRNA downstream 409595 3853728 ~ 3898562 (-) False G250223
TU283978 lncRNA downstream 409595 3856058 ~ 3898562 (-) True G250223
TU283977 lncRNA downstream 449173 3853728 ~ 3858984 (-) False G250223
TU283975 lncRNA downstream 449861 3852442 ~ 3858296 (-) False G250223
TU284176 lncRNA upstream 26760 4336860 ~ 4337089 (-) True G250409
TU284177 lncRNA upstream 32410 4342510 ~ 4342853 (-) True G250410
TU284072 lncRNA upstream 36629 4346729 ~ 4348920 (-) True G250308
TU284063 lncRNA upstream 97754 4407854 ~ 4408916 (-) True G250299
TU284221 lncRNA upstream 231888 4541988 ~ 4542231 (-) True G250451
CI01000058_04276892_04277098.mRNA mRNA downstream 30612 4276601 ~ 4277545 (-) True CI01000058_04276892_04277098
CI01000058_04211165_04255297.mRNA mRNA downstream 52621 4210879 ~ 4255536 (-) True CI01000058_04211165_04255297
CI01000058_04183820_04207647.mRNA mRNA downstream 100465 4183606 ~ 4207692 (-) True CI01000058_04183820_04207647
CI01000058_04178879_04179912.mRNA mRNA downstream 126360 4178287 ~ 4181797 (-) True CI01000058_04178879_04179912
CI01000058_04100253_04135812.mRNA mRNA downstream 171649 4099713 ~ 4136508 (-) True CI01000058_04100253_04135812
CI01000058_04321968_04325974.mRNA mRNA upstream 10381 4320481 ~ 4326404 (-) True CI01000058_04321968_04325974
CI01000058_04412049_04428358.mRNA mRNA upstream 101633 4411733 ~ 4429252 (-) True CI01000058_04412049_04428358
CI01000058_04462468_04465591.mRNA mRNA upstream 152251 4462351 ~ 4466016 (-) True CI01000058_04462468_04465591
CI01000058_04689004_04691552.mRNA mRNA upstream 378892 4688992 ~ 4691552 (-) False CI01000058_04689004_04691552
CI01000058_04702204_04717881.mRNA mRNA upstream 389888 4699988 ~ 4717881 (-) True CI01000058_04702204_04717881
TU283989 other downstream 611446 3688643 ~ 3696711 (-) True G250230
TU282944 other downstream 1446964 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU281026 other downstream 3653208 646443 ~ 654949 (-) True G247592

Expression Profile