RNA id: TU283975



Basic Information


Item Value
RNA id TU283975
length 3808
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G250223
representative False

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3852442 ~ 3898562 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTGAGACAAAAGAAGTTCAATCCATATTTATTATAGTCTTTTTGTCATTCAAAATATTACTTTTGTAAAATCAAAAAATGCAACAGGAACGCTAAAACTTCAAGACAAATTTTATCATTCAAACTACCATTAAAGAGTATTTACACAACAGAATAGATGCTATTTAAGTATAATGATCATCACTTCATATTAATATACAGTCTTATTAGTTAAAAAAAAGAGGTAGGGTCAACAGCTTCATTTCAGATGTCTGGAACGAATCAGAAATAAGTCATTTCCATTATTGAACACTAAGATGATGACACAATAGTCAGTGTACACTGTAATTAAACCCACTGCACATCTCATTCTGCATCAGCATATAGATGTCAAATGTGACAGAAGCTTGACAGCAAAAAACATAAGGCAACAGGAAAAAAAATATCTGAACATCATTCATATGTGAGTCACATAGAATGAGAACATAGGGAAGGATGAGCGTGATGGACAATATTAAAGGGATAATCACATAAAAAAGAAAATTCTGTCATCATTTACTCAACCTCAAGTTGTTCCAAACCAGTATGAATTTCTTTCTTCTGCTGAACACAAAAGAAGATATTTTAAAGAATGTGGGTAACCAAACAGTTGATGGTCCCCATTGACTTCCATAGTTTGTGTTCAGCAGAAAAAAGAAATTCATACAGGTTTGGAACATCTTGAGAGTGAGCAAATGACAGAATTTTAATTTTTGGGTGAACTATCCCTTTAAGTGTGAAAAACAATGGGAGGAAAAGACAAAGCAAGAAAGAGGGACCGGCATTGAGGTCCGAGTGGCTTTTAAGGCACCATCAGCAGCTGTATGGAGACAGAACACTGGGAAGTGTTCTTATGATGTATTCCGTGCATCTCAGATGGAAGTCTAAAACCAACTCCACATAAATCACTCTATAAGTATTAGCAGGGAAACTTTTCTATGCAGCATGTACTCCATTAAGGTAGTAATTATAACATCAAGATCAATTTACCGTCCTATAAAACTCCAGAGAAGACATTTGTCCATCTCTAAACAAAAATATTATTCTGATAGGTCAGGAAGCAACTATAAGGGAGTTATGTAACAGCAAGAAGGTAGGCAAGAAGGTGGGTAATCTTCAAGTCTGTATCTATGTAAAATATATTTTTTTAAAGTAAAAAATGCATCATTGCTATCTTGGCATTATGGGCATCTACAAAAAATGATTAAAAGAACACCCAAAATCCTTTAAAAAAGTTAAACAGATAGTGATTTTTAAATCTAATTTTTGCAATTTTAGTGTACATCACATCAGAAACCAGAATCATGTGCAGAAGCGCTGGTACAGAAGCCCAGATACGATCATTAGATCACCTCAAATGAAGTTTCCTTCATTTATCAATGTACTGCCAGGTGATGCTTTAACAACATTACAATCAACTGAAAGCAAACCCTGCCGTCAGTATACTGCTGTAACATATTCATGCTAAAGCACCAACAAAGACATTTGGCACCTCAAAGAGTGGTGAAAATAAAGGAGGAACCAATAAAAAAAAAAAAAAAAAAAAAATCCAAAATTTACGGGTTGCCTCAAAAGTCTAAAAGTCAGATGTGATATGTAATTGTATAGTGTATTGGCAGCACTGCGTTCTGCTATACTCGAGTACATCAGTGGTTGGTCTGTGAGCGGCAGTGTTGAGAACAGCGTGCATACTGTGTTTATTAACGCACACCATTCATTATGTGCTTCTGGTGGATGTCCAGAGTAGTGCCGTCTTCTTTGTTGTGTTGGGAAGGGCTCAAGTCTTCCTCCCAAAGCTGAGCAGCTTTACGGATCTCATCCAGAGTGTATTCCTGCAGGATGGTCCCATTTTCAAACACAGTCACCAACATGTCCTACAAAAGAAGACCATATTAATAAGGATCACCAAAAAAGTTGGGGGTCAGTAAGTATTTATGTTTTTTATTTTTAATTGTAATATTACTGTCACATGATCACGTCACATGAACTCTGTTTGTTTTTCTGTCATGTGTTCCTTTGTTTGACATCAGGAACACATCGGCTCTTCCCGCCACTATCAGTTACCATGGACATTAATCACATTCATCACAGCTGTTCGTTATTTGTCTTAATCAGTCAGTGTGTTTAAGTTCCTGTTTGTCTTCAGTTCTTTGTCGGGTCTCGTTTATGGATGTAATGTGTTGGTGTTTGTTCTTAATCAGTCAGTGTATTTAAGTTCCTGTTTGTCTTCAGTTCTTTGTCGGGTCTCGTTTATGGATGTAATGTGTTGGTGTTTGTTCTGCTCTGGATTCTGTGTTTCTCCCTGTGGATTATCAAGTAAAGACTTATCTTACTTTACTCTACCTCGTCGTGTGTTTGCTCAGCCACCATTACGTAACAATTACACAGTGTTTTTACTGTATTTTTGATCAAATAAATTCAGCACTTCCATAGAAGTAAATGCAATTTTCTACATAAAGTGTGTCCACAATTTACCAAAGTAATCATATTTAAATCATCATATGTTTAGGAATGCAAAAAAAAAAAAAAAGGGCACAATGTTCATGTGAATTTTTTTTTTTTTTTTTTTGTGAAACATCAGGGAATTAATGGGTTAAGAGCCAGATGTTGCAAAAAGCAGGTACTTATTAGTTATTATAGTTAATAAAGTTTTTTAAATATGGATATTTTTCTTACAAAAACCCATCGCTTCGCTTCAGAAGGCCTTTATTAACCCACTGGAGCTGTATGGATTATCTTTTATATTGGATGGATGCACTTTTTTTGGGCTTCAAAACATGCCCCCTGTTCACTCCCATTATAAAGCTTGGAAGAGCCAGGATATTTTTAAATTAATTTTGTTCGTCTGAAAGAACATAGTCATATACCGTACACCTAGGATGGCTTGAGGGTGAGTGAATCATGGGATAATTTTTATTTTTGGGTGAACTATCCTTTTAAGGTAACAATTGGACTTTTTACAGTGTGTACAGCTAAACTAACCTCCTCTGGTTTGCCCGCTCCTCTTTCCACTGTCTCAATGCAGCCATCTGAGTTTCTCCTCAGTGAGAGACGGCCACGCTTGGATCCTTTAGATGGGTCCGTCACTGGCTGCTTATAGACGTCCATCTATGAGAACACAAATGACATGATAGTAAAAGAAAAAATAACAATAAAACTCGAATTTATTTTGTGACAGGATGTTTTGAAAGTGAAACTGAAAAAACTCACGCCTTTGCCATGGGTCTCCACATAGCTGCACTTGAAAGCGCAGTTAAGCGTGTCCCTGTTGATTTTCTGCAGGAGTGCACTTCCACAACCGAAAAACACATTTTCAGCACTCCAACCCTCATCGCTTAGTTTCTCCAGAATCTGCGCTAGCCAAAATAAACAGTATTGCTGATCAGAGAATAATCCCTGATTTCCACTGTGTAATCAGTAATAATGTTTATAATCTAACAGTCAGAAATAGTTGATAAACATTCAGGGCCAGTATCACATTTTCCCTGGACACACTATTCAATACACTTAATATACAACAGCACGTGATAGTTAATATGTTATAACTTGCTAGTCATATGAGCACATCTAGAATCAAGTCCAAAATTTTTGCAAAATGGCAGAAATTGCATTTCTCTAATTGATACATTATTTCATTTAATTACTCATCATCAATTTCATTTGCATTTAATTTACACAAGAATTTGCAAAACTATTTGTGTGTTAATTGAAAACTGAACATGAATTTCCAATTTCGAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACACCGTAAGACCTTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU283986 lncRNA downstream 1113 3839079 ~ 3851329 (-) True G250227
TU283990 lncRNA downstream 13510 3835057 ~ 3838932 (-) True G250231
TU283995 lncRNA downstream 135898 3714043 ~ 3715288 (-) True G250236
TU284030 lncRNA downstream 178476 3673736 ~ 3673966 (-) True G250268
TU284020 lncRNA downstream 197866 3654062 ~ 3654576 (-) True G250260
TU284162 lncRNA upstream 309516 4167812 ~ 4168126 (-) True G250395
TU284090 lncRNA upstream 449861 4308157 ~ 4310100 (-) True G250326
TU284176 lncRNA upstream 478564 4336860 ~ 4337089 (-) True G250409
TU284177 lncRNA upstream 484214 4342510 ~ 4342853 (-) True G250410
TU284072 lncRNA upstream 488433 4346729 ~ 4348920 (-) True G250308
CI01000058_03684461_03827727.mRNA mRNA downstream 24715 3684461 ~ 3827727 (-) False CI01000058_03684461_03827727
CI01000058_03668662_03671701.mRNA mRNA downstream 180257 3668546 ~ 3672185 (-) True CI01000058_03668662_03671701
CI01000058_03239666_03330001.mRNA mRNA downstream 522441 3239666 ~ 3330001 (-) False CI01000058_03239666_03330001
CI01000058_03154548_03160071.mRNA mRNA downstream 692371 3154539 ~ 3160071 (-) True CI01000058_03154548_03160071
CI01000058_03136045_03137264.mRNA mRNA downstream 715178 3135699 ~ 3137264 (-) True CI01000058_03136045_03137264
CI01000058_03904018_03906800.mRNA mRNA upstream 45601 3903897 ~ 3908108 (-) True CI01000058_03904018_03906800
CI01000058_03950901_03956376.mRNA mRNA upstream 92605 3950901 ~ 3956376 (-) True CI01000058_03950901_03956376
CI01000058_03977379_03991942.mRNA mRNA upstream 118568 3976864 ~ 3991942 (-) True CI01000058_03977379_03991942
CI01000058_04100253_04135812.mRNA mRNA upstream 241417 4099713 ~ 4136508 (-) True CI01000058_04100253_04135812
CI01000058_04178879_04179912.mRNA mRNA upstream 319991 4178287 ~ 4181797 (-) True CI01000058_04178879_04179912
TU283989 other downstream 155731 3688643 ~ 3696711 (-) True G250230
TU282944 other downstream 991249 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU281026 other downstream 3197493 646443 ~ 654949 (-) True G247592

Expression Profile