CI01000058_01807681_01819809


Basic Information

Item Value
gene id CI01000058_01807681_01819809
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1807671 ~ 1819809 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_01807681_01819809.mRNA
GTCAGCCAGATGAACACACACATAACAGCCCACAAAGCCAAGGTAAGGCATCAGTGCTTCTTCCTTATCCTGTGCTTTCATTTGGTCTGTGCTGGTGTGCCAGGTCCATGTAAGCACTCTGTCACACAGGACCATCTCCTGAATTTAAAACGTCTGATTAAGAACCAGCTGCAAAATGGTTGTTCAATAACCTACACTTTCACTGAACGCCAGAACCTGAGTGTTGTGTGTTATGTTAAAGCAGCATTTCCTCACATTCTGGAGCTACTCAACACCCAATTCAGCTATGCTAAGGACTCCGACAATTATCGTTACACTAATTCACTGAAGAACTTGATCTACAACATTTACTCCCAGAGATGCATCCCTCCAATCAATGAGGAGATTGAGGATAGCCCAACGAAGTTCATAAGAATCCACATGACTTTGCCCAGGGCAGCTTTGGAGAAAGCTGAGGAAGTGATTCGCATGTATATGGGTCTAATGACTCAGAGCGACAAGCCTGTGGACTGGAACTGTGAGGAGGAGTACACAGAGGATTACCCAGAATCCACCACTGAACCTCTCAGCCAAACAGCAGGTGCCTCTGAATGCCCCTGCATTTGTCCAACACTGAGCAGTGGATCATCTAGGACATCTACATCCACAAGCCATTGGAATATTTATTTGAAATCTACTCCATCCCCACAAAGATCATCTTTTTCACCTGTGGTAACCTTGCAGGGTGGTAATGAGAGAACTAAACAATTCAAGTCTGCTGTCCCAGTAGCCAAACACCAAACACTAGCTCCAGGGACACCTACCACATGGAGATCAATGCAAGGACATTTACCCAACTTCCTCTTTGGTAGCAATCCAGCTTTACCTGAAGAAACTTCAAATTCAGTGATGCAAAATATGCCATCATCGGATCTTTTCCCTTCATTTACAAATTCTAAGGATGTATTTCCGAGCAGAACTGACTCAACTGTTCAGTCAACTGCATCTGGCCCCTATCAAAAAAACACAAGAGATAACACACAGGACAGTGTGGAGAGGAGCACGCCGCTTTTACTTGCCAAGAGGTCTTTAGATTCTAAAAGCCAGAAAGGACCATCCAGTTCCTATGTGAAATTATCCCAGAACAGGGTTACTGCAACATCTGAGCCAACATATAAAGATATAAAGAGTACAGAGATAAAAGGCAAGTCTTTCCAGACAAGTAAACACATTGTACCAGTCACAACCACAGTTATGTCTTCTTTGAAAGCAGCTGCACATTCATCAGGTCTGAGCATCCTTGTTGAACAGCCAGGTCATCTAAACAGCCCTCCTGAAAATTTCCAAACACACACCCAAAGTCCGGTGAGGATGCCAAGGAATTTCATTGGAACCATCCATGAGGCAAAGCTCAGCAGGGACAGCAAATCCCAGGAGGACAGGAAGGGGATGAAAGACCAGACTTATCCAGACAGAGAAACACAGAGGAACTCTGCCACAGAAGAATCATCCAGCAGTTCAATCATCTCTTTTGACACTGTGCTCATAATTACTCTAGGGTGCGGTGGACTTCTGCTCATAACTGTCCTATTTTACAGACAGCAAAAAGTAAGTGACCCACAGTGGATTTTTGCCCTGCTGAAAAGACCCGATGTGTATTACTGTATTGTTTTCGAGTCACGTGCTTCTTCTAACATATGACTTTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_01807681_01819809.mRNA True 1690 mRNA 0.44 8 1807671 1819809

Neighbor

gene id symbol gene type direction distance location
CI01000058_01694694_01723697 NA coding downstream 83463 1694679 ~ 1724208 (-)
CI01000058_01680894_01693752 NA coding downstream 113466 1680794 ~ 1694205 (-)
CI01000058_01528111_01564969 NFASC, NFASCA coding downstream 242702 1527499 ~ 1564969 (-)
CI01000058_01510773_01517931 NA coding downstream 288489 1510350 ~ 1519182 (-)
CI01000058_01462558_01465691 CHIA.1 coding downstream 341542 1462523 ~ 1466129 (-)
CI01000058_02049299_02051461 LRRN2 coding upstream 229480 2049289 ~ 2051809 (-)
CI01000058_02100559_02106600 NA coding upstream 280209 2100018 ~ 2106652 (-)
CI01000058_02192060_02196086 NA coding upstream 371987 2191796 ~ 2196086 (-)
CI01000058_02198525_02205429 NA coding upstream 378687 2198496 ~ 2205437 (-)
CI01000058_02207230_02214219 NA coding upstream 386460 2206269 ~ 2214219 (-)
G249024 NA non-coding downstream 16459 1790734 ~ 1791212 (-)
G249014 NA non-coding downstream 39569 1755961 ~ 1768102 (-)
G248958 NA non-coding downstream 184718 1621013 ~ 1622953 (-)
G248955 NA non-coding downstream 190017 1617451 ~ 1617654 (-)
G248943 NA non-coding downstream 197854 1605938 ~ 1609817 (-)
G249077 NA non-coding upstream 4205 1824014 ~ 1824332 (-)
G249078 NA non-coding upstream 5466 1825275 ~ 1825552 (-)
G249082 NA non-coding upstream 9633 1829442 ~ 1829792 (-)
G249086 NA non-coding upstream 17929 1837738 ~ 1837976 (-)
G249087 NA non-coding upstream 18251 1838060 ~ 1844012 (-)
G247592 NA other downstream 1152722 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 1038674 2858483 ~ 2861491 (-)
G250230 NA other upstream 1868834 3688643 ~ 3696711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003427 csf1a coding NC_007122.7 CM002895.2 23265157 ~ 23297192 (+)