CI01000058_04174884_04175951 (RHOL)


Basic Information

Item Value
gene id CI01000058_04174884_04175951
gene name RHOL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4174800 ~ 4176830 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_04174884_04175951.mRNA
CTATAAAGGCACTTAAACAGAGTGTGCTCAATTTCCCAGACCAAACAAACATACAGCGAAAGGTGGAGAAACAAACCAGCGATCATGAATGGCACTGAGGGACCGGACTTTTACGTTCCCATGTCCAATGTGACTGGAGTGGTGCGCAGCCCTTACGAGTACCCACAATTCTACCTGGCATCGCCACTGGCATTTTATTGTGTCGCCGCATACATGTTCTTCCTCATCGTTACCTGCACCCCCATCAATGGCCTCACACTGTATGTGACCATTGAAAACACGAAGCTTCGGACCCCGCTGAACTACATCCTTCTGAACTTAGCTGTGGCCGACCTCTTCATGGTGTTTGGTGGATTCACGACGACCTTCTACACCTCCTTACACGGATATTTTGTCCTAGGACGTGCTGGCTGCAACTTGGAGGGCCTCTTCGCTACGCTCGGTGGTGAGATTGCGCTCTGGTCTCTGGTTGTCTTGGCTGTTGAGAGATGGGTGGTCGTCTGCAAGCCCTTCACTAAATTTCGCTTCACGCAACTCCACGCCACCTTCGGTGTTGCCTTCTCTTGGACAATGGCCTGTTCGTGTGCCATACCACCTCTAATTGGATGGTCCCGCTACATTCCTGAGGGCTTGCAGTGTTCGTGCGGAGTGGATTATTACACATTGAATCCTGAGACTGAAAATGAGTCTTTTGTTATCTACATGTTCCTTGTGCACTTCACAATCCCTCTCACCATCATTTCTTTCTGCTATGGCCGTCTGCTCTGTGCTGTCAAGGTAGCAGCCGCCCAGCAGCAAGAATCTGAAACTACTCAGAGGGCCGAGCGAGAAGTTACCCGAATGGTAATCCTCATGGTCATCGCTTTCCTAATATGTTGGGTCCCCTACGCCAGCGTCGCCTGGTATATCTTCACCCACCAAGGGAGTCAGTTCAGCCCTATTTTCATGACCATCCCGGCATTCTTTGCCAAGAGCTCAGCGCTCTACAACCCACTCATTTACGTCATGATGAATAAGCAGTTCCGTCACTCCATGATGTTAGTAGTGTTCTCAGGAAAGGATCCTTTCCAGGATGAGGAGGAAGTAAGTTCCACCTCAAAGTCCAAGACAGAGACCTCATCCGTCTCCTCAAGCTCTGCTTCTTCTGACTGAGGGTCATGCTCAAGGCTATTTGTGGAATTTACAATTCAACTGCCTGCCACTTATGACAGCTTCCCTGTAAGGACATATGGAAAATTCTGACGGCAGATTGAGTTGTATACTAATATCTCAGTACACAGGCGTTTCAATACAGCTCAGACTGTGAATGGGATAAAATGATTTTAAATATATATATATATAAAAATATATAATATGTGCAATTATTATTATTATAGCATGATAAGAACAGCACTTTATATATTTATATGTGAATTCAGGGGCGACACACAACTCTTAATGTGCAAGAGGACCTGGGTTCAAATCTTGATGTTATATATTATATTCATAATTGGGATTTTATATATATATGTGAGGTCAGTGAGATTAGCAAGGATGCATTACATTGATCAAAAGGGACAGTAAAGACTTCTACATTGTTACAAAATATTTCTTAAAAAAATATATATCATGGTTTCTACAAAAATAAATTAGCAGCACAACTGTTTTCGACATTGTTAATAATAAGAAATGTTTCTTGTGCAGCAAATTAGCATATTAGAATGATTTCCGAAGGATCATGTGAAGTAATGATGATGAAAAATCAGTTTTGCCATCACAGGAATAAATTACATTTAAAATATATTCAAATAAAAAGCAAATTTAAATCAAATTAATATTTTAATAATATTTCACTATCTATCTATCTATCTATCTATATATAGAGATAGATAGATACAGTATATATATATATATATATATATATATATATATATATATATATATATATATATGCACTGATCACTGCAACAACAGCTGAAAAAGAGTGTGTGCTAAACAGGATCAAGATAAATACAAAGGTTTTCAGAGAATGAATCAAAGAATCACTTTTTA

Function

symbol description
rhol Enables photoreceptor activity and retinal binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; heart; integument; testis; and visual system. Human ortholog(s) of this gene implicated in congenital stationary night blindness autosomal dominant 1; fundus albipunctatus; night blindness; retinitis pigmentosa; and retinitis pigmentosa 4. Orthologous to human RHO (rhodopsin).

NR:

description
RH1 opsin

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_04174884_04175951.mRNA True 2031 mRNA 0.40 1 4174800 4176830

Neighbor

gene id symbol gene type direction distance location
CI01000058_03959155_03965275 SLC2A9L1 coding upstream 209202 3959155 ~ 3965598 (+)
CI01000058_03915537_03946197 ATXN7 coding upstream 226727 3914922 ~ 3948073 (+)
CI01000058_03889526_03896649 SYNPR coding upstream 278045 3889314 ~ 3896755 (+)
CI01000058_03846867_03850723 SYNPR, NAMPTB coding upstream 324077 3846867 ~ 3850723 (+)
CI01000058_03645458_03659734 NA coding upstream 515038 3645458 ~ 3659762 (+)
CI01000058_04263520_04265153 NA coding downstream 86294 4263124 ~ 4265628 (+)
CI01000058_04272001_04275349 NA coding downstream 95076 4271906 ~ 4275431 (+)
CI01000058_04303891_04308850 NA coding downstream 126974 4303804 ~ 4308997 (+)
CI01000058_04344622_04358133 NA coding downstream 166191 4343021 ~ 4358133 (+)
CI01000058_04360496_04365634 PFKFB2, F262 coding downstream 183666 4360496 ~ 4366118 (+)
G249873 NA non-coding upstream 3708 4170590 ~ 4171092 (+)
G249869 NA non-coding upstream 20309 4154247 ~ 4154491 (+)
G249839 NA non-coding upstream 58408 4115652 ~ 4116392 (+)
G249776 NA non-coding upstream 120353 4024700 ~ 4054447 (+)
G249774 NA non-coding upstream 155107 4019469 ~ 4019693 (+)
G249886 NA non-coding downstream 41098 4217928 ~ 4218769 (+)
G249899 NA non-coding downstream 63407 4240237 ~ 4240895 (+)
G249970 NA non-coding downstream 163942 4340772 ~ 4340984 (+)
G249981 NA non-coding downstream 186877 4363707 ~ 4413637 (+)
G249980 NA non-coding downstream 241095 4417925 ~ 4418264 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2377068 1794468 ~ 1800421 (+)
G247940 NA other upstream 2718353 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 2886530 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3577629 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 3719056 434913 ~ 455744 (+)
G250039 NA other downstream 517578 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 649546 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004094 rhol coding NC_007122.7 CM002895.2 19095431 ~ 19097746 (-)