XLOC_004094 (rhol)


Basic Information

Item Value
gene id XLOC_004094
gene name rhol
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 19095431 ~ 19097746 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007813
CTACAGCAAACCAGCAACCATGAACGGCACAGAGGGACCAGACTTTTACGTTCCCATGTCGAATGAGAGTGGCGTGGTGCGCAGCCCTTATGAATACCCACAATACTACTTGGCATCTCCGTTTGCGTTCTACTGCATGGCCGCGTACATGCTGTTCCTCATCGTGACCTGCGTTCCTGTCAACGGTCTCACTTTGTACGTAACCATCGAAAACAAGAAGCTCCGGACGCCTCTGAACTATATCCTTCTGAATTTAGCGGTGGCTGACTTGTTTATGGTGTTCGGTGGATTTACAACGACCTTCTACACCTCCATGCATGGATACTTTGTCCTGGGACGGGCTGGTTGCAACTTAGAGGGTCTTTTTGCAACCGTTGGCGGTGAGATTGCACTTTGGTCTTTGGTTGTTCTGGCTGTTGAGAGATGGGTAGTCGTTTGCAAGCCTTTCACCAAATTTCGCTTCTCACAACTTCATGCTACCTTAGGAGTGGCTTTTTCTTGGTCGATGGCCTGTTCGTGTGCCATTCCTCCACTCCTAGGATGGTCCCGGTACATCCCCGAAGGCTTGCAGTGCTCTTGCGGAGTGGACTACTATACGCCGAATCCTGAGACTGAGAACGAGTCGTTTGTCATCTATATGTTCGTGGTTCATTTCTCAATCCCTCTCACCATCATTTCTTTCTGCTATGGGCGCCTGCTTTGCACTGTGAAGGTTGCAGCTGCCCAGCAGCAAGAATCAGAAACTACACAAAGGGCTGAGCGCGAAGTGACCCGAATGGTGATCCTCATGGTCATCGCATTTTTAATATGTTGGCTCCCCTATGCCAGCGTGGCCTGGTACATCTTCACCCACCAGGGGAGTCAATTCGGCCCTGTTTTTATGACGGTCCCGGCTTTTTTTGCCAAGAGCTCAGCTCTCTACAACCCGCTCATTTACGTCTTCATGAATAAGCAGTTTCGACACTCCATGATGATGACGGTGTGTTGTGGAAAGGATCCGTTCCAAGATGAGGAGGAAGGAAGCTCCAGCTCTAAGTCTAAGACTGAGACCTCGTCCGTCTCCTCTAGCTCAGCTTCTTCTGCCTGAGGCTCAGGCTCTGGGCTATTTGTGGAAAACACAACTCCACTGCCTGCAGATTATGACAGGACTTATGGAAGATTCTGAAATGAAAGATGGAGTTGTATAGATatgtttcaaaaaatattttaaatattatgtgcAATTACTATAATTGTTCTAATAATATATCAAGAATATtagtttattataaaaatgtgtgattttatatttacatattttcttttacttatggtaacactttagaataatgccccattagttcatgtatttactaacatgacctaAGTGCCAATAATAACCTTGTTCactaactaatgcattattaaaacaaaagttgtccttgttaacattagttaatgcaccatgagttcaTATAAACTAATGtaagttaaaataaatgacaCTAAATAACGttaaggcggttcattccgctgtggccacccctggttTATGAGGgaataagcagaaaagaaaaaagattaaataacgctaacaaagatgaataaataaccATAATAAACATATATctaatagtttgttcatgttagtaaatacattaactaacattaactatggaccattattttaaagtgttactgaatATACAAACAGTATAAGATTCGTAAGACATATAAgataagattttatttatttttctattttgaaAGAAATACAGCAAGCATGTATTCATTTGATCAATTGCAATGGTCAAAATATTGTTATTCGACTTACAGTAGTTGTCAAATATAGGATTATCTTTGCTATTTATTGAAACGTGGCTGTTATGTGGATGCTTTTTTAAGCAGTGTAATTTGAACATGCATTTTAGTTGTTTCGTATAAATTAATGCAAGGAAACAGGCTTATTAAGAACTGTGTAGGAGAAGTTTTGCTAATCACTTTACAGTGGGCAATTAAGGAAATGCTGTTTACTGATTTTATTCCAAGTTAATGTATATTTTAGTTGCTGTGAGATGCTGGATTTTGTAGTGAAGTGAAATACAACACATTTTACCAATCAACTGCAGTGAGAATTGTTTTCAAAATCGgtgatgacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaataataataataataataataataattattataatttttcttgAGCAACAACTCAGAATATTAAAAGGATAAAGACTGAGGTAATGGCTGTTAAGCTTTGCTATTTCAAGAATAAAAggcatttttaaatgta

Function

symbol description
rhol Enables photoreceptor activity and retinal binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; heart; integument; testis; and visual system. Human ortholog(s) of this gene implicated in congenital stationary night blindness autosomal dominant 1; fundus albipunctatus; night blindness; retinitis pigmentosa; and retinitis pigmentosa 4. Orthologous to human RHO (rhodopsin).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0016918 retinal binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-6 Enables photoreceptor activity and retinal binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; heart; integument; testis; and visual system. Human ortholog(s) of this gene implicated in congenital stationary night blindness autosomal dominant 1; fundus albipunctatus; night blindness; retinitis pigmentosa; and retinitis pigmentosa 4. Orthologous to human RHO (rhodopsin).

Ensembl:

ensembl_id ENSDARG00000070666

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007813 True 2316 mRNA 0.39 1 19095431 19097746

Neighbor

gene id symbol gene type direction distance location
XLOC_004093 NA coding downstream 4330 19088414 ~ 19091101 (-)
XLOC_004092 NA coding downstream 243062 18849926 ~ 18852369 (-)
XLOC_004091 pfkfb2b coding downstream 276253 18784847 ~ 18819178 (-)
XLOC_004090 id1 coding downstream 390128 18704191 ~ 18705303 (-)
XLOC_004089 zmynd8 coding downstream 490889 18560667 ~ 18604542 (-)
XLOC_004095 CT737428.1 coding upstream 82706 19180452 ~ 19180555 (-)
XLOC_004096 BX511159.1 coding upstream 318432 19416178 ~ 19416315 (-)
XLOC_004097 slc2a9l1 coding upstream 392589 19490335 ~ 19501440 (-)
XLOC_004098 atxn7 coding upstream 413896 19511642 ~ 19598809 (-)
XLOC_004099 SYNPR coding upstream 525179 19622925 ~ 19694334 (-)
XLOC_004063 CR854846.1 misc downstream 2967753 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 6403740 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 6473664 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 6504135 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 6582169 12512966 ~ 12513262 (-)
XLOC_004082 LO018315.7 non-coding downstream 946943 18144285 ~ 18148488 (-)
XLOC_004078 CR589944.2 non-coding downstream 1186749 17906902 ~ 17908682 (-)
XLOC_004073 NA non-coding downstream 1865578 17223850 ~ 17229853 (-)
XLOC_004104 NA non-coding upstream 1854310 20952056 ~ 20953249 (-)
XLOC_004108 NA non-coding upstream 2019874 21117620 ~ 21119973 (-)
XLOC_004115 CT573222.1 non-coding upstream 2654729 21752475 ~ 21752589 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_04174884_04175951 RHOL coding CI01000058 null 4174800 ~ 4176830 (+)