XLOC_004093


Basic Information

Item Value
gene id XLOC_004093
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 19088414 ~ 19091101 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008786
CTggatttttaaaaagctgtcgACTCTGTGGGTAGCGTATTGAATCTCTTTTCCTTCACCTTCTGAACTGCCAAGAAGATAAAGAAGTCTTTGTTCTCTCCTCCTCTTTATTTTCCAGACATGTTGGCAAAGTGTTAGAGAAGAacccaatgcagttaaacacagTCTCTGCCTCCCACACGCATCCATCTTGAATACATTTCACAGGGCCAAGTTGTACTCGGCTCGACCGGCTAACTAGCCCATTTCCTTTTTCTGAGCTGGAGAATTAAAAGAAAGAGCGTCaagatgtgtgtatatatactgtttttattttttgaacgTTATCATCATAGTTTTATTTCATTATCCCttcattcttttaaaatgatCACCTCTGAATGTACACATACTGCAAACtgtcaaaaatatacaaacaaatgcAGGCTTGTGCTATACTCTGGTCAAATGTCTAAAAAACAGTGGCACTGGggaagagaaagaaaataaagaagaGAAAGGACATTGAAAGTGTAAAGACATGCACAGTATATGTCTGAGCACCACGTTGGCTGAGCTGCTCGGTGCATGAGAGGGCTCTCTGTAACTGAAGGTCTCTGAATCAGATAGTAGTCCAAAAGGCTGTCCTTTGTCAAACAAAATGAacgaaaaagcaaaaaaatacacCAAGAATGGTACTGTTAGGCACATAATCGTTTCCTTTATACATAGTTGTCAAACTCTGTAGAACTGCTAGCAGATTTATAAAAAGGGTCATAAAAGAAAGCAAAAATGACACTTCAATGGAAAGAGACAAAATCATTCTTCTGCTGTTGAGAGTTGTAAAGATGCTCAACCATGAAAAAACACCAGATTTCAAATCAATAATTTAGTATCCAGGGTCTGCACAGTCCTTGGACGAAGGCTCGAGTGGACATTGGGCTCTAGGTATGTGGTCCTTCCAGCCGAACCGATCAGATGCTGAGATCTTTGGGGCTTTCTCTGTAGGCATTCCTCCTGGGCTCAGGTACGTTGTTGTTAGCTCTGCTGTAATTAGATCGGAGCGGGCTATAATACTCGCTCAGCTGAGACTCAAcctcctcttcttcctcatcGCGGAACCCTCGAATGGGAGACAGGTCTCGACCTAGACTCCTTGTTCGGTATGAGCTTGCAACCGGAGACTGATCTCTGCGATATGCATCGTGTCTGTTCCCAACTCTCACTGGAGAACGGCCCCTCAGTAATGAGTTGTAATTCCGGAAAGCTGAATCTGACTCTGGCGTTCGAACACGGGGAAAGGTGCCATCACGCGAAGCCCCTCGGAGAAGGGTCGACTCTCGATAGGCGCGCTCCATTGGGGAAAGGTCACGACGGTAGCTGGGGGGTTCTCTCATTACAGTGTCTTCCAGACTGAGCCGGTCTAAAAGTGGAATGCTCTCAGAGCGGGATGGGGGCTTCGGAGGAGGAGGTTCCTTTAGGGTCACGTCAATTCCCCTGTCGAACTCTTTATCCGTGGGACGTCTTGAGGGAGACTGGTATCTGGAGCGTTGAGGGGAGCGATAGGGGGATCTGTTGCGATAAGGAGAGCTTCGGCGATAACCAGATCGGTGAGGTGAGCGATGGGGTGAGCTGTGTCTGCGTGGGGAAGAGTGGCGATGGTGCCGCCTGTCTGGTGAGCGTCCGTTTCTCTGGGTGTGTCTACTGTCTAAGGTGTCCCCGGCACTTCGAGTTCTGCGCCTCTCTGGGGAGCGGTGCCTTTGGCGGTGATGGTGGTACTGGTTGCGGCTGTTGCtgtggtggtggtgatgatgatgcgAATCATCCGTACTAGATTTCTTCTTGTCCCCCTTCTTCCTGTGAGACTTTGAAGTTCCACTGTCCTTACCGTGCCCTTTGCTCCTGCTCTTCTTTTCAGGGGAGCGGTGTCTGTGGTTGTTGTGGCGGTGGTTTGACCGGTGACCATGCTCCCGTTGGCCTGACTCCCGTGTCCTTTTGTTGTCATTTCGGGATGATTTGTGAAGGTCTGGTGGATAGCTGGACTCCGATGggagcACG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008786 True 2037 lncRNA 0.48 2 19088414 19091101

Neighbor

gene id symbol gene type direction distance location
XLOC_004092 NA coding downstream 236045 18849926 ~ 18852369 (-)
XLOC_004091 pfkfb2b coding downstream 269236 18784847 ~ 18819178 (-)
XLOC_004090 id1 coding downstream 383111 18704191 ~ 18705303 (-)
XLOC_004089 zmynd8 coding downstream 483872 18560667 ~ 18604542 (-)
XLOC_004088 dido1 coding downstream 530485 18531984 ~ 18557929 (-)
XLOC_004094 rhol coding upstream 4330 19095431 ~ 19097746 (-)
XLOC_004095 CT737428.1 coding upstream 89351 19180452 ~ 19180555 (-)
XLOC_004096 BX511159.1 coding upstream 325077 19416178 ~ 19416315 (-)
XLOC_004097 slc2a9l1 coding upstream 399234 19490335 ~ 19501440 (-)
XLOC_004098 atxn7 coding upstream 420541 19511642 ~ 19598809 (-)
XLOC_004063 CR854846.1 misc downstream 2960736 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 6396723 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 6466647 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 6497118 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 6575152 12512966 ~ 12513262 (-)
XLOC_004082 LO018315.7 non-coding downstream 939926 18144285 ~ 18148488 (-)
XLOC_004078 CR589944.2 non-coding downstream 1179732 17906902 ~ 17908682 (-)
XLOC_004073 NA non-coding downstream 1858561 17223850 ~ 17229853 (-)
XLOC_004072 CR769769.3 non-coding downstream 1940953 17144309 ~ 17147461 (-)
XLOC_004104 NA non-coding upstream 1860955 20952056 ~ 20953249 (-)
XLOC_004108 NA non-coding upstream 2026519 21117620 ~ 21119973 (-)
XLOC_004115 CT573222.1 non-coding upstream 2661374 21752475 ~ 21752589 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_04178879_04179912 NA coding CI01000058 null 4178287 ~ 4181797 (-)