XLOC_004108


Basic Information

Item Value
gene id XLOC_004108
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 21117620 ~ 21119973 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008788
CTTCCGTACACATGCGAAGGCGGTACTTATCCCATCTTTTCTCAAAAACTACTGGtccaaaagacatcaatcaaGATTTGGATTGTGCAATAGGTATTCCCCCAGAGAATGAACACACAAGCATGCTTATCTGGCTTTCAATGACGGAGGAGTCGTCGTTTGAGTGCGCTGAATAGCAAAAAGTGTACGGaacatggttagtctacgttaAATCTGTGATTACAGCAACTAATAGACATTATGTTATACAGGAATATACTGCTGTTATATGACCCACAAGAGATTTAGCTACTGTTTGATGTCAATCCACAGGGGTCACCTCCAGTCCGAGGACAGAAAGCAACATCCTGTCTTTAGAGGAAATCCTTTTCTGGAACAGTAAGATGCACCTCATCATACAGCAGTTTcagtttcagcatttttttttcattagtgtAACTGTGTTTAGTTAAGGTGTCAAAGCCGCTGTTCTCAGAGGCGTTCTGCAATGACGCACATGAGAGTGCTTGATATGAGGCACGTCGACCAGCATATAGGAtgaagcttttgtggctcgtgcCTTTGTGGGTGCCGATACCCACATGACTGCGACTGTGTTTCAAAACAAAACGGTATGCATCTGCTGCAAGCGTACCTATGGATGTTTTGCAGCATAGAAGCTCCTCCCTTCCTGTCGCTGCATGGAACACTGTGTGCATGTCTTGTTTTCAATGACCAACATTATGAAATCTTAAATCTTTGTATGCTCAGTTGATTTgatctgcaaaataaaaaatgttacaaaaagtgTAAACGCAAAAACATTACTGTTTGGTGATAGGtggattttaaaaacaaacaaacacgtgtGTAAAGGATCAACATGGAtgtttcattttccttcaacgtagtctctattttagaggttgccactgtgaaatgaactgccaactattccagcacatgttttacacagtggatgct

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0061053 somite development biological_process
GO:0061061 muscle structure development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008788 True 963 lncRNA 0.41 2 21117620 21119973

Neighbor

gene id symbol gene type direction distance location
XLOC_004107 fmoda coding downstream 85847 21025895 ~ 21031773 (-)
XLOC_004106 slc6a14 coding downstream 103048 20994026 ~ 21014572 (-)
XLOC_004103 taf4a coding downstream 129382 20887446 ~ 20988238 (-)
XLOC_004105 CABZ01008739.1 coding downstream 161311 20953926 ~ 20956309 (-)
XLOC_004104 NA coding downstream 164371 20952056 ~ 20953249 (-)
XLOC_004109 mapkapk2a coding upstream 34705 21154678 ~ 21218172 (-)
XLOC_004110 dyrk3 coding upstream 139383 21259356 ~ 21267486 (-)
XLOC_004111 RASSF5 coding upstream 158714 21278687 ~ 21363834 (-)
XLOC_004112 ikbke coding upstream 244578 21364551 ~ 21404358 (-)
XLOC_004113 srgap2 coding upstream 285724 21405697 ~ 21586157 (-)
XLOC_004063 CR854846.1 misc downstream 4989942 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 8425929 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 8495853 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 8526324 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 8604358 12512966 ~ 12513262 (-)
XLOC_004096 BX511159.1 non-coding downstream 1701305 19416178 ~ 19416315 (-)
XLOC_004095 CT737428.1 non-coding downstream 1937065 19180452 ~ 19180555 (-)
XLOC_004093 NA non-coding downstream 2026519 19088414 ~ 19091101 (-)
XLOC_004092 NA non-coding downstream 2265251 18849926 ~ 18852369 (-)
XLOC_004115 CT573222.1 non-coding upstream 632502 21752475 ~ 21752589 (-)
XLOC_004116 NA non-coding upstream 773629 21893602 ~ 21906060 (-)
XLOC_004117 NA non-coding upstream 969462 22089435 ~ 22094397 (-)
XLOC_004123 CR555297.1 non-coding upstream 2039216 23159189 ~ 23159307 (-)
XLOC_004125 BX571675.2 non-coding upstream 2185782 23305755 ~ 23309318 (-)

Expression


Co-expression Network