XLOC_004106 (slc6a14)


Basic Information

Item Value
gene id XLOC_004106
gene name slc6a14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 20994026 ~ 21014572 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007835
ACTTACCTGTTGCTCTTGAGACTGTGCTTAAGTATGAAGGATTACAGCTTGAAGAACATTAGAGGAGTACTATTCAAAAACTCAGTTGGAGATGAACAGGATAAAGATAAATCTGACAAGGCTGAACATGTTGTACAGAATGATGAAAACTCTGacaggggaaactggagcagtaAAAGAGAGTACATGCTGTCTATGATTGGTTACGCTGTTGGTCTTGGCAATGTTTGGAGATTTCCTTACTTGGCTTACAAACATGGAGGAGGGGCCTTCCTCATCCCGTACACTATCATGCTGGCTGTTTCTGGTCTGCCCTTGTTCTTCATGGAAAGCTCTTTTGGACAGTTCTGCAGTCAAGGCCCCATCAATGTGTGGAAAGCTGTGCCCATACTGCAAGGTGTTGGCATCACGATGATGCTGGTTAGCACTTTTGTGGCGATCTACTATAATGTGATCATTGCATACAGTATCTACTACCTCTTTGCATCTTTTCAAGATCCTCTGCCCTGGAGCATTAAGAACTGCAATACAACAGCCTCCAACATTTCTACTGCAGCAGTGAATGTGTCCTGCGGTCAAATCTCAGGCCAGAGCCTCAGTGAAAAATACTGGGATGAGGTGGCTCTTCAGCGCAGTAGCAGTATGGATGAGACAGGGCCGGTGGTCTGGCATCTGGCTCTTTGTCTTCTGCTCTCCTGGATACTAGTGGGAGCAGCTCTTTTCAAAGGCATCAAGTCCTCTGGAAAGGTGGTGTATTTCACAGCTACTTTCCCTTACATCGTGCTTTTGATCCTGTTGATTCGTGGTGCAACTCTCGAAGGTGCGAAAGACGGCATCGAGTTTTACATCGGCTCACAGTCTAACCTCACCAAACTGGCTGAGGCTGAGGTTTGGAAAGATGCAGCTACTCAGATCTTCTTTTCTCTGTCCATCGCCTGGGGTGGTCTGATGGCTCTGTCGTCTTACAATAAGTTTTACAATAACTGCTACCAAGACTCTATTGTGGTCTGTGTTACAAACTGCGGCACCAGCATCTTTGCTGGTTTTGCCATCTTTTCCGTACTTGGACACATGGCGCATGTCTATCAGAGACCAGTGTCAGAAGTTGCAGATGCTGGTTTTGCACTGGCCTTCATTGCATACCCTGATGCTCTCTCTAAGCTGCCCATTTCACCCCTGTGGTCAATCCTGTTCTTTTTTATGCTTATTACTCTCGGCTTGGATTCCCAGTTTGCAGGAATAGAGGTGATCAGCAcctgcctcctggatgcctatcCTGAAGTTTTGAAATCCAAACGAGGTCTTGTTACAACAGCGGTCTGCATTATTCTCTTTCTGCTCGGCTTGCCATGCGTCACCAGGGCAGGAATATACTGGGTGAATTTAATTGACACATTTAGTGCCGGATGGATTCTCCTGGTTGCTGGATTACTAGAGGTCTTGGGTTTGTGCATCCTGTATGGTGGTAATCGCTTCATCAAGGACATTGAGATGATGATTGGGACCAAGAGCTCCCTCTTCTGGTTGTGGTGGAGAGCTTGCTGGTTTTTCATCACTCCAGTGGTTTTGTCTATTATTCTGATATGGTCTTTGTATACCTTTACATCCCCGACATATAGCTCAGTTGCATATCCTGATTGGGGCATTTCTCTGGGCTGGTGTATCACTGCATTTAGCCTCATGTGGATTCCTATTGTTGCTGTCTGGAAAGTGTGTAAAGCGAGAGGAGGACTGTGGCAGCGTATCAAATCTGCCTGCTCTCCTACAGAAGACTGGGGTCCTTACCTGGAGTGTCACAGAGGGGAGCGCTACGGTACCAGAGGAGAGACTGATCCAAATATATTTGTAATCTCAAACAAAGTCTCTACtagattgtaaaatattttagtttgaacAAGTATTTGTACATATATTGTATACAAATCTAGCACACTTGTCTCTTTCTAATTTAATACACAAgataaacatgttttgtaaatACACATAATCCTTTTGTTTGA

Function

symbol description
slc6a14 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in liver. Human ortholog(s) of this gene implicated in obesity. Orthologous to human SLC6A14 (solute carrier family 6 member 14).

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-130411-2 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in liver. Human ortholog(s) of this gene implicated in obesity. Orthologous to human SLC6A14 (solute carrier family 6 member 14).

Ensembl:

ensembl_id ENSDARG00000029866

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007835 True 2000 mRNA 0.45 14 20994026 21014572

Neighbor

gene id symbol gene type direction distance location
XLOC_004103 taf4a coding downstream 5788 20887446 ~ 20988238 (-)
XLOC_004105 CABZ01008739.1 coding downstream 37717 20953926 ~ 20956309 (-)
XLOC_004104 NA coding downstream 40777 20952056 ~ 20953249 (-)
XLOC_004102 ogfrl2 coding downstream 898008 20091255 ~ 20096018 (-)
XLOC_004101 C11H3orf14 coding downstream 922119 19991633 ~ 20071907 (-)
XLOC_004107 fmoda coding upstream 11323 21025895 ~ 21031773 (-)
XLOC_004108 NA coding upstream 103048 21117620 ~ 21119973 (-)
XLOC_004109 mapkapk2a coding upstream 140106 21154678 ~ 21218172 (-)
XLOC_004110 dyrk3 coding upstream 244784 21259356 ~ 21267486 (-)
XLOC_004111 RASSF5 coding upstream 264115 21278687 ~ 21363834 (-)
XLOC_004063 CR854846.1 misc downstream 4866348 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 8302335 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 8372259 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 8402730 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 8480764 12512966 ~ 12513262 (-)
XLOC_004096 BX511159.1 non-coding downstream 1577711 19416178 ~ 19416315 (-)
XLOC_004095 CT737428.1 non-coding downstream 1813471 19180452 ~ 19180555 (-)
XLOC_004093 NA non-coding downstream 1902925 19088414 ~ 19091101 (-)
XLOC_004092 NA non-coding downstream 2141657 18849926 ~ 18852369 (-)
XLOC_004115 CT573222.1 non-coding upstream 737903 21752475 ~ 21752589 (-)
XLOC_004116 NA non-coding upstream 879030 21893602 ~ 21906060 (-)
XLOC_004117 NA non-coding upstream 1074863 22089435 ~ 22094397 (-)
XLOC_004123 CR555297.1 non-coding upstream 2144617 23159189 ~ 23159307 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_03181624_03193630 SLC6A14 coding CI01000058 null 3181420 ~ 3195924 (+)