XLOC_004101 (C11H3orf14)


Basic Information

Item Value
gene id XLOC_004101
gene name C11H3orf14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 19991633 ~ 20071907 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007825
GTAAATGGCTTCTTATACAGTCGAAGAGTTTGAGCTCAGCCAGAAACACGAGGATATACTGGGGAAAAGAGCATTACTTCTGCAGCAGATGGAGGCGCACTATGAACAGCAGAGAGCTAAGAGAAAACAGCAGTTTCTGATGTGTCAAGCAGCGAAGCAGAGGAATGCTCAGATTCTTAAGGATttagaaaatgttgaaaaaaatcttcaaacTAGACAGCTCCTTCATCCAAATATTATTAGCCTTGAGACTCGGTATTGGGCCTCAGTTGAAAGGAATCTGCCAGAATGGGAGCAGTATTTGCTTGGGAAAGGACAACCACCTTTAAGCGAAtctgagaaaaagttaaagcaaCAGAGACTGAAAACAGCACAGCAAGATCCTTCACCTGCACAGTGCAGGGGTAAACCACCTCGACCCAAACCTTGATGACATAACTTTTTGAGGCTCCCAAGACTCTCGTTCGAATCCTCTGTGAATGGACTGAGCGATGGACGACTCCATAAGATCCACATACCTCACCACCAGAGGAGCAAACAGATCCTGCAGGTGCTTGTGAAACTTCCCATTACACAGATTATCTGAAAGAGGGAAGAACAGACTAAATGTGTGCTGACATACAGCAAACCTACA
>TCONS_00007826
TTCCTAACTCTAGATGGTGCGCTTGTTCTAATGTTGCCAAGTGGTGCTCACTGTTGAGCTCACTTCCGCACACGTGGTAGTTGGTAGTCATGGTAACGCAAGGCTTTTCTGCTTTCGGAGAGCGTCATCGCAGGAAAATACTAGCGGTTATTATTATGACAAAGTTTGGGTTTCTGTTGCATATTGCAGCGATATTTTCTTTCATAAAGTTACAATCACATGGCAAAGTTtgacttttatttctttttgtctCTCTGAAACGACAGTAAATGGCTTCTTATACAGTCGAAGAGTTTGAGCTCAGCCAGAAACACGAGGATATACTGGGGAAAAGAGCATTACTTCTGCAGCAGATGGAGGCGCACTATGAACAGCAGAGAGCTAAGAGAAAACAGCAGTTTCTGATGTGTCAAGCAGCGAAGCAGAGGAATGCTCAGATTCTTAAGGATttagaaaatgttgaaaaaaatcttcaaacTAGACAGCTCCTTCATCCAAATATTATTAGCCTTGAGACTCGGTATTGGGCCTCAGTTGAAAGGAATCTGCCAGAATGGGAGCAGTATTTGCTTGGGAAAGGACAACCACCTTTAAGCGAAtctgagaaaaagttaaagcaaCAGAGACTGAAAACAGCACAGCAAGATCCTTCACCTGCACAGTGCAGGGGTAAACCACCTCGACCCAAACCTTGATGACATAACTTTTTGAGAAATAACGAGCAGAGCAAAGAGAATATTTCAGCCAGAACAAACACAGCACCGCAAACCAGAGAGGAAAGATTAAGAGAAGCAGAGAAGCAGTGCAAGACAGAAAGAGTAAAAGATCAACAGAGAAAAAGACAGAGAAGAGGGTCTCAAAATGTGACTTATCCCTCCTAACTAGCTTTTATGTCACATTTTGGAGGGCCTCCCCCCTTCAGAGAGGGAGAAGACAGCCAGTACTTACATCAAATAACCTTTCTATATACATCTCCTCATTGACCTTATCCCGCAAGACATCCTGAGAGTGGCGAACGAACGTCACATAGCTGTCAGCCACGTCCATCCCAGGCTTCTGCAGATGATgacaagagagagagaagagagagatgTGTTAGAGTTTAAGAGTGTTTAAATATTACAACATGTAATGCTTAAACATAAAAGGTTCTTTAGTGTTGTCGATGTTTGTAATGTGAAACACTGAATTCTATACACTCACACAACATTGGCTGAGTTTTTTCGATATTTTACCCAAAATCTGGATGAGATATTCCATCATTCTAAAAGTTGCGAGAGAATTCAATGCAGACCCACCTCTATTCTGCACTATTTGTAAGAGTGCACTATTTGTAAGAGATTACACTTTTGGATTTACTGCTTTGATAAATGCATGTTAAACTTGACTCTTGTTAATCTTGttacttatttaatgttttatttttatttttttttttgggggggggggga
>TCONS_00007827
AGCGTCATCGCAGGAAAATACTAGCGGTTATTATTATGACAAAGTTTGGGTTTCTGTTGCATATTGCAGCGATATTTTCTTTCATAAAGTTACAATCACATGGCAAAGTTtgacttttatttctttttgtctCTCTGAAACGACAGTAAATGGCTTCTTATACAGTCGAAGAGTTTGAGCTCAGCCAGAAACACGAGGATATACTGGGGAAAAGAGCATTACTTCTGCAGCAGATGGAGGCGCACTATGAACAGCAGAGAGCTAAGAGAAAACAGCAGTTTCTGATGTGTCAAGCAGCGAAGCAGAGGAATGCTCAGATTCTTAAGGATttagaaaatgttgaaaaaaatcttcaaacTAGACAGCTCCTTCATCCAAATATTATTAGCCTTGAGACTCGGTATTGGGCCTCAGTTGAAAGGAATCTGCCAGAATGGGAGCAGTATTTGCTTGGGAAAGGACAACCACCTTTAAGCGAAtctgagaaaaagttaaagcaaCAGAGACTGAAAACAGCACAGCAAGATCCTTCACCTGCACAGTGCAGGGGTAAACCACCTCGACCCAAACCTTGATGACATAACTTTTTGAGGTGTGTAGTTGATTTGTGTTTGTTATGATGACATGTTAGATCATAACTGTAGCACTTTACAATGGTTACGAGGTAATGTTCATGCATTATGATTGAAGTACTGTAGGAACAAAATGAGCAATACAGTTTTTAATACTCAAGTTagacttttttgttgtttatttcagCTGCGTGTCGTCAAATCAGGATTTTATACTAGAGAGAAAGTGCTAGGTTTTCTGgaattgtttgaaaacaaattctGTAATTAATGATTTAAACAATATCATTTtccaattattttaataagttaaacacattaatataaaatagtaaTTGGATTCAAATAGCTTGctgttatataaaattaatagcacAAAAATGTGACTAaacattattcaaataaattatacaaactttaattaaaaaaagtgattaacatactaattatattaaaacaaataataaaaattagttaaaatatttatagagagaaatataaatattatgtatgaGTATTGTAATGAGCAGAAAAATGTAGTTACTTGTTGTTAAATGTAGTAACTTAATAGTAAATAATTGTTTTGCAGTATATAATTCATAATATATAGCATAATAAATATAAGATAATTCAGAATAAATTGCGATAACATATATTATATTAGGCATGGTTGATCTCATGTAAGGGTCCACTGCATGTAAAAAGTTGAAACCACCAACATTAACTGTAGCAGCATTTACAAATGATTCAgtgtttcatttaatttgttgAAATAAACAGGAACTTATTACTTTCA
>TCONS_00007828
TTCCTAACTCTAGATGGTGCGCTTGTTCTAATGTTGCCAAGTGGTGCTCACTGTTGAGCTCACTTCCGCACACGTGGTAGTTGGTAGTCATGGTAACGCAAGGCTTTTCTGCTTTCGGAGAGCGTCATCGCAGGAAAATACTAGCGTAAATGGCTTCTTATACAGTCGAAGAGTTTGAGCTCAGCCAGAAACACGAGGATATACTGGGGAAAAGAGCATTACTTCTGCAGCAGATGGAGGCGCACTATGAACAGCAGAGAGCTAAGAGAAAACAGCAGTTTCTGATGTGTCAAGCAGCGAAGCAGAGGAATGCTCAGATTCTTAAGGATttagaaaatgttgaaaaaaatcttcaaacTAGACAGCTCCTTCATCCAAATATTATTAGCCTTGAGACTCGGTATTGGGCCTCAGTTGAAAGGAATCTGCCAGAATGGGAGCAGTATTTGCTTGGGAAAGGACAACCACCTTTAAGCGAAtctgagaaaaagttaaagcaaCAGAGACTGAAAACAGCACAGCAAGATCCTTCACCTGCACAGTGCAGGGGTAAACCACCTCGACCCAAACCTTGATGACATAACTTTTTGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000086324

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007825 False 634 mRNA 0.44 5 19991633 20071642
TCONS_00007826 False 1451 mRNA 0.40 5 20017328 20071907
TCONS_00007827 False 1368 mRNA 0.32 4 20068245 20071787
TCONS_00007828 True 592 mRNA 0.45 5 20069021 20071907

Neighbor

gene id symbol gene type direction distance location
XLOC_004100 namptb coding downstream 216451 19729771 ~ 19775182 (-)
XLOC_004099 SYNPR coding downstream 297299 19622925 ~ 19694334 (-)
XLOC_004098 atxn7 coding downstream 392824 19511642 ~ 19598809 (-)
XLOC_004097 slc2a9l1 coding downstream 490193 19490335 ~ 19501440 (-)
XLOC_004096 BX511159.1 coding downstream 575318 19416178 ~ 19416315 (-)
XLOC_004102 ogfrl2 coding upstream 19348 20091255 ~ 20096018 (-)
XLOC_004103 taf4a coding upstream 815539 20887446 ~ 20988238 (-)
XLOC_004104 NA coding upstream 880149 20952056 ~ 20953249 (-)
XLOC_004105 CABZ01008739.1 coding upstream 882019 20953926 ~ 20956309 (-)
XLOC_004106 slc6a14 coding upstream 922119 20994026 ~ 21014572 (-)
XLOC_004063 CR854846.1 misc downstream 3863955 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 7299942 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 7369866 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 7400337 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 7478371 12512966 ~ 12513262 (-)
XLOC_004095 CT737428.1 non-coding downstream 811078 19180452 ~ 19180555 (-)
XLOC_004093 NA non-coding downstream 900532 19088414 ~ 19091101 (-)
XLOC_004092 NA non-coding downstream 1139264 18849926 ~ 18852369 (-)
XLOC_004082 LO018315.7 non-coding downstream 1843145 18144285 ~ 18148488 (-)
XLOC_004108 NA non-coding upstream 1045713 21117620 ~ 21119973 (-)
XLOC_004115 CT573222.1 non-coding upstream 1680568 21752475 ~ 21752589 (-)
XLOC_004116 NA non-coding upstream 1821695 21893602 ~ 21906060 (-)
XLOC_004117 NA non-coding upstream 2017528 22089435 ~ 22094397 (-)

Expression


Co-expression Network