XLOC_004100 (namptb)


Basic Information

Item Value
gene id XLOC_004100
gene name namptb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 19729771 ~ 19775182 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007824
CTGATACTAGACGATGCGACCTATCCGTGCGCGCCCTCACATATACAAGATACCGAGGTGATCATATTTCACTACATTTCTCTGACCAAACACGCAAGGTGCCGTGAAGAAGCTCACAGAGACCGGTGTCACGCTGATCGGACCACATACACACTACAGCAAAGCGACATCGTTTCGCTTTTACTTTGTCCTCGATGATGGCAGCTCAGGATTTCAATTTTTTACTCGCCACAGACTCTTATAAGATTACCCACTACAAGCAATACCCACCCAATATAAATAAAGTCTACTCCTATTTCGAGTGCCGGCATAAAAAGGGGGCGCAGTTCAGTGAGGTGGTGTTTTTTGGCCTGCAGTATCTCCTGAAGAAATACCTAACAGGTCCAGTCATTACAGAGGAAAAGATTCAGGAGGCAAAAGTGTTTTATCAGATGCACTTTAAACAGGCGGTGTTCGACGAAGAGGGATGGAGGAAAGTTTTAGAGAAATATGATGGCCGTCTTCCAATCCGTATCAAAGCAGTTCCAGAGGGGAAGATCATTCCCAGAGGGAACGTTCTTTTCACAGTGGAGAACACGGATGCAGATTTCTTCTGGCTCACCAATTACATTGAGACGATGCTGGTCCAAATGTGGTATCCCATCACCGTGGCAACAATCTCCAGGGAGTTCAAAAAGATTCTGGCCAAGCACCTGAAGGCCACGTCAGGGAACCTGGAGAGTCTGGACCTCAAACTGCACGATTTCGGCTACAGAGGAGTGTCTTCACAGGAGTCAGCAGCGCTTGGTGGAGCTGCTCATCTGGTGAATTTCTGCAGCACAGACACAGTGGCAGGATTGCTGATGGCACAGCGATACTATGGATGTCCAATGGCTGGATTCTCCATCCCTGCAGCAGAGCACAGTACCATCATCTCGTGGGGACGGAGTCGAGAAAAAGACGCGTTCGAGTGTCTGCTGGACCAGTTTCCCTCTGGACCTGTGGCAGTGGTTAGCGACAGTTATGATATTTTCAAGGCTTGTAAGCACATCTGGGGAGACAAGCTGAAAGAGAGAGTGATGGAGAGGAGTGAAGATTCCGCCCTCATTATCCGCCCAGACTCCGGGGATCCAGCTGAAACCCTCTTAGAGGTGATAAAGATTTTGGAGGAGTGTTTCGGATGTTCTCTGAACTCGGTTGGTTACAAAGTGCTTCCGTCATACCTGCGCATTATCCAGGGGGATGGAATTGATTTGAACTCGATAAATGAGATTCTGCAGAAACTGAGCGATGAGGGTTGGAGTGCTGAAAATGTGTTTTTCGGTTGTGGAAGCGCACTTCTGCAGAAAATCAACAGAGACACACTTAACTGCGCATTTAAGTGCAGCTATGTGGAGACCTGTGGCAAAGGcATGGATGTCTATAAGCAGCCAGTGACGGACCCATCTAAAGGATCTAAGCGTGGTCGTCTCTCTCTTAGAAGAAACTCCGATGGCTTCATTGAGACGGTGGAAAGAGGAGCTGGCAAACCAGAGGAGGACATGCTGGTGACTGTGTTTGAAAACGGGACCATCCTACAGGAGTACACTCTGGATGAGATCCGGAAAGCTGCTCAGCTTAGGGAAGAAGATTTGAGCCCTTCCCTGCACAACAGAGAGGACGGCACAACTCTGGACATCCACCAAAAGCACATAATGAATGGCGTGCACTAAATACAGTATGCACAGACACGGTTCTCTATGAACACTGCCCTCTACAGACCAACCACTCACACACGCTCTGCAACACTCAGATGCCCATCTGCACTCGCTTATGGCAGTACTTCCAGTACACATTTACATATCACATCTGACTTGCGAAGCAGCCCATACATTTTTAATCGGTtgccatatatacatatatttttattagttcaCTTTCTCTACTTTTTAAGATGCCAAATATATTTGTCGGTGCTTCAGCAGGAGAATATTGACCACAGGgtttgcatttgcattttcaGTCAGTTGtaatattattaaaggaatagttcacccaaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000027183

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007824 True 2020 mRNA 0.47 11 19729771 19775182

Neighbor

gene id symbol gene type direction distance location
XLOC_004099 SYNPR coding downstream 35437 19622925 ~ 19694334 (-)
XLOC_004098 atxn7 coding downstream 130962 19511642 ~ 19598809 (-)
XLOC_004097 slc2a9l1 coding downstream 228331 19490335 ~ 19501440 (-)
XLOC_004096 BX511159.1 coding downstream 313456 19416178 ~ 19416315 (-)
XLOC_004095 CT737428.1 coding downstream 549216 19180452 ~ 19180555 (-)
XLOC_004101 C11H3orf14 coding upstream 216451 19991633 ~ 20071907 (-)
XLOC_004102 ogfrl2 coding upstream 316073 20091255 ~ 20096018 (-)
XLOC_004103 taf4a coding upstream 1112264 20887446 ~ 20988238 (-)
XLOC_004104 NA coding upstream 1176874 20952056 ~ 20953249 (-)
XLOC_004105 CABZ01008739.1 coding upstream 1178744 20953926 ~ 20956309 (-)
XLOC_004063 CR854846.1 misc downstream 3602093 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 7038080 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 7108004 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 7138475 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 7216509 12512966 ~ 12513262 (-)
XLOC_004093 NA non-coding downstream 638670 19088414 ~ 19091101 (-)
XLOC_004092 NA non-coding downstream 877402 18849926 ~ 18852369 (-)
XLOC_004082 LO018315.7 non-coding downstream 1581283 18144285 ~ 18148488 (-)
XLOC_004108 NA non-coding upstream 1342438 21117620 ~ 21119973 (-)
XLOC_004115 CT573222.1 non-coding upstream 1977293 21752475 ~ 21752589 (-)
XLOC_004116 NA non-coding upstream 2118420 21893602 ~ 21906060 (-)
XLOC_004117 NA non-coding upstream 2314253 22089435 ~ 22094397 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_03846867_03850723 SYNPR, NAMPTB coding CI01000058 null 3846867 ~ 3850723 (+)