RNA id: TCONS_00007824


Basic Information

Item Value
RNA id TCONS_00007824
length 2020
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_004100
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 19729771 ~ 19775182 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGATACTAGACGATGCGACCTATCCGTGCGCGCCCTCACATATACAAGATACCGAGGTGATCATATTTCACTACATTTCTCTGACCAAACACGCAAGGTGCCGTGAAGAAGCTCACAGAGACCGGTGTCACGCTGATCGGACCACATACACACTACAGCAAAGCGACATCGTTTCGCTTTTACTTTGTCCTCGATGATGGCAGCTCAGGATTTCAATTTTTTACTCGCCACAGACTCTTATAAGATTACCCACTACAAGCAATACCCACCCAATATAAATAAAGTCTACTCCTATTTCGAGTGCCGGCATAAAAAGGGGGCGCAGTTCAGTGAGGTGGTGTTTTTTGGCCTGCAGTATCTCCTGAAGAAATACCTAACAGGTCCAGTCATTACAGAGGAAAAGATTCAGGAGGCAAAAGTGTTTTATCAGATGCACTTTAAACAGGCGGTGTTCGACGAAGAGGGATGGAGGAAAGTTTTAGAGAAATATGATGGCCGTCTTCCAATCCGTATCAAAGCAGTTCCAGAGGGGAAGATCATTCCCAGAGGGAACGTTCTTTTCACAGTGGAGAACACGGATGCAGATTTCTTCTGGCTCACCAATTACATTGAGACGATGCTGGTCCAAATGTGGTATCCCATCACCGTGGCAACAATCTCCAGGGAGTTCAAAAAGATTCTGGCCAAGCACCTGAAGGCCACGTCAGGGAACCTGGAGAGTCTGGACCTCAAACTGCACGATTTCGGCTACAGAGGAGTGTCTTCACAGGAGTCAGCAGCGCTTGGTGGAGCTGCTCATCTGGTGAATTTCTGCAGCACAGACACAGTGGCAGGATTGCTGATGGCACAGCGATACTATGGATGTCCAATGGCTGGATTCTCCATCCCTGCAGCAGAGCACAGTACCATCATCTCGTGGGGACGGAGTCGAGAAAAAGACGCGTTCGAGTGTCTGCTGGACCAGTTTCCCTCTGGACCTGTGGCAGTGGTTAGCGACAGTTATGATATTTTCAAGGCTTGTAAGCACATCTGGGGAGACAAGCTGAAAGAGAGAGTGATGGAGAGGAGTGAAGATTCCGCCCTCATTATCCGCCCAGACTCCGGGGATCCAGCTGAAACCCTCTTAGAGGTGATAAAGATTTTGGAGGAGTGTTTCGGATGTTCTCTGAACTCGGTTGGTTACAAAGTGCTTCCGTCATACCTGCGCATTATCCAGGGGGATGGAATTGATTTGAACTCGATAAATGAGATTCTGCAGAAACTGAGCGATGAGGGTTGGAGTGCTGAAAATGTGTTTTTCGGTTGTGGAAGCGCACTTCTGCAGAAAATCAACAGAGACACACTTAACTGCGCATTTAAGTGCAGCTATGTGGAGACCTGTGGCAAAGGcATGGATGTCTATAAGCAGCCAGTGACGGACCCATCTAAAGGATCTAAGCGTGGTCGTCTCTCTCTTAGAAGAAACTCCGATGGCTTCATTGAGACGGTGGAAAGAGGAGCTGGCAAACCAGAGGAGGACATGCTGGTGACTGTGTTTGAAAACGGGACCATCCTACAGGAGTACACTCTGGATGAGATCCGGAAAGCTGCTCAGCTTAGGGAAGAAGATTTGAGCCCTTCCCTGCACAACAGAGAGGACGGCACAACTCTGGACATCCACCAAAAGCACATAATGAATGGCGTGCACTAAATACAGTATGCACAGACACGGTTCTCTATGAACACTGCCCTCTACAGACCAACCACTCACACACGCTCTGCAACACTCAGATGCCCATCTGCACTCGCTTATGGCAGTACTTCCAGTACACATTTACATATCACATCTGACTTGCGAAGCAGCCCATACATTTTTAATCGGTtgccatatatacatatatttttattagttcaCTTTCTCTACTTTTTAAGATGCCAAATATATTTGTCGGTGCTTCAGCAGGAGAATATTGACCACAGGgtttgcatttgcattttcaGTCAGTTGtaatattattaaaggaatagttcacccaaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000037894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008786 lncRNA downstream 638670 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00008466 lncRNA downstream 877402 18849926 ~ 18852369 (-) False XLOC_004092
TCONS_00007830 lncRNA upstream 317262 20092444 ~ 20095839 (-) False XLOC_004102
TCONS_00007831 lncRNA upstream 319438 20094620 ~ 20095481 (-) True XLOC_004102
TCONS_00008787 lncRNA upstream 1176874 20952056 ~ 20953249 (-) True XLOC_004104
TCONS_00008788 lncRNA upstream 1342438 21117620 ~ 21119973 (-) True XLOC_004108
TCONS_00008789 lncRNA upstream 2118420 21893602 ~ 21906011 (-) False XLOC_004116
TCONS_00007823 mRNA downstream 35437 19624490 ~ 19694334 (-) True XLOC_004099
TCONS_00007822 mRNA downstream 78990 19622925 ~ 19650781 (-) False XLOC_004099
TCONS_00007821 mRNA downstream 85482 19622925 ~ 19644289 (-) False XLOC_004099
TCONS_00007818 mRNA downstream 130962 19511642 ~ 19598809 (-) False XLOC_004098
TCONS_00007819 mRNA downstream 143912 19514881 ~ 19585859 (-) False XLOC_004098
TCONS_00007825 mRNA upstream 216451 19991633 ~ 20071642 (-) False XLOC_004101
TCONS_00007826 mRNA upstream 242146 20017328 ~ 20071907 (-) False XLOC_004101
TCONS_00007827 mRNA upstream 293063 20068245 ~ 20071787 (-) False XLOC_004101
TCONS_00007828 mRNA upstream 293839 20069021 ~ 20071907 (-) True XLOC_004101
TCONS_00007829 mRNA upstream 316073 20091255 ~ 20096018 (-) False XLOC_004102
TCONS_00007815 other downstream 313456 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 549216 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007803 other downstream 1125336 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007777 other downstream 1821089 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 3085258 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007850 other upstream 1804744 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 1977293 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007863 other upstream 2821932 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007873 other upstream 3384007 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 3880168 23655350 ~ 23655478 (-) True XLOC_004130

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_03846867_03850723.mRNA True 477 mRNA 0.52 3 CI01000058 3846867 ~ 3850723 (+)