RNA id: TCONS_00008789


Basic Information

Item Value
RNA id TCONS_00008789
length 1493
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id XLOC_004116
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 21893602 ~ 21906060 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gATTTAGTTTGTATTTCCATCATTTCTAAAAGGTAAACAGTATGAAATTGTGTACAATGGAGTCTGTTTCCTCTCTTCACCACAGCAGGAACACCAGCAGAGCCTGGGGACGAggaaaacaacacatttatttactGGAGAGTAAACAAGACCAAccatgcagaaaaacaaaactttatgaGGGCTAAACAAGGACAGCGCGAGTGAACAAGAGCCATGCAGCCCTTCAGACAGATTACAGTCAAAGACAAAGAGGATTGCGTGCATTACCGGcaaacacagagaaagagagaagcaCATGAAATGGCAATTAAACCACGGTGACCCTCATCGCCTCCGCAGGTCACTCGCTGTCACAGTGTCGGCTGAAAATAAGAGAGGAGACGCAAACAAGCGGTGCGTATGATCCGATGTGTTTCTCCAACAGCTATAAAACCTGGAAATCTTGCAAAGCAGAGAGCGCCAATGGCATCTTATTTGTGTGTGTACCGACAACAGAATGTATCCAGGGAAGCGTGGGGCATGTTGGGACGCAAAGGGTTTGTAACAACATCTCAGACTCGTCCTTAAATACTGCAACAAGCACTTAGTTTGACAAGCTGTTGACAGAAATGACACGACTTGAGCTTAACGCAGTGACAGCCTAAACTGAGGTGTGTTCATTCCCTTAGAGCCAGAAGACACTTAAGGcgggagggaaaaaaaaaacattgcgcTATGAGATGATGCTATTTGTGCACAATAAATGTTTATCGGGATTTATTGTGCTGCTATGACATCCTGGCTGAAAGCTTTCGGTAACTAAACGAGGGAGAATTAACCGTTGCATTTAGGAGCTTTAAATAGCACTATGGAGGGAGGGATGGCATGGGCAAGGACTTGCACTATGACTGCACGTCTCGTTTAAAGTGCACGTTAAAAAAGCTGCATTGATACTGTATAAGAAGACCTTCAAAACTCTGCACTAATGCCAAAGAATAAGGGATTAATGAATGATCCATGACCTCATTGGCCTCGAGAGAGTTTTTCAAAGTGACTAAATGCTCTGGAGCACAATGACAGGAACCGGCGCAGTGGATGCTTCtgccatttattaaattattcccTCCAATCTGTTTGATGATTTTCATAATTCACACTCAACTGAAATATTAAGGCCTTGAAAAGCCCTTCACTCTGCTTTAAAATGCAAggaaagaaatgtttaaaaaagacagAGAATTGGGAACGCTCAGGTCAAACCCTCAAaagaattggatttttgactttttttagaataatctttttttttctttccacacCAATGTGTTAATTTTGTACAATGGTGAACTAAATTTAATACATGGGGTCCGGATGAGAGTGCTCAGATAAATAAGATTGAAATTGAAGATTTAAATACATTTGCCTTAAAGTGTACTTGTTTAAAATTACTAAAAACTAAGAAGAGGAAAGCAAAGCTTCATTTTTATTCAAACGCACAAGTTAAAAGAGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008788 lncRNA downstream 773629 21117620 ~ 21119973 (-) True XLOC_004108
TCONS_00008787 lncRNA downstream 940353 20952056 ~ 20953249 (-) True XLOC_004104
TCONS_00007830 lncRNA downstream 1797763 20092444 ~ 20095839 (-) False XLOC_004102
TCONS_00007831 lncRNA downstream 1798121 20094620 ~ 20095481 (-) True XLOC_004102
TCONS_00008786 lncRNA downstream 2802501 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00008792 lncRNA upstream 183424 22089435 ~ 22094397 (-) True XLOC_004117
TCONS_00008467 lncRNA upstream 999188 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00008468 lncRNA upstream 1003753 22909764 ~ 22912113 (-) True XLOC_004121
TCONS_00007872 lncRNA upstream 1087009 22993020 ~ 23080960 (-) True XLOC_004122
TCONS_00007876 lncRNA upstream 1399744 23305755 ~ 23309318 (-) False XLOC_004125
TCONS_00007851 mRNA downstream 281292 21582560 ~ 21612310 (-) True XLOC_004114
TCONS_00007848 mRNA downstream 307445 21405697 ~ 21586157 (-) False XLOC_004113
TCONS_00007849 mRNA downstream 308426 21406686 ~ 21585176 (-) False XLOC_004113
TCONS_00007847 mRNA downstream 365546 21405697 ~ 21528056 (-) False XLOC_004113
TCONS_00007845 mRNA downstream 489244 21364551 ~ 21404358 (-) False XLOC_004112
TCONS_00007854 mRNA upstream 381943 22287954 ~ 22361306 (-) False XLOC_004118
TCONS_00007853 mRNA upstream 381943 22287954 ~ 22361306 (-) False XLOC_004118
TCONS_00007855 mRNA upstream 382076 22288087 ~ 22361306 (-) False XLOC_004118
TCONS_00007856 mRNA upstream 386369 22292380 ~ 22303678 (-) False XLOC_004118
TCONS_00007857 mRNA upstream 386432 22292443 ~ 22303706 (-) True XLOC_004118
TCONS_00007852 other downstream 141013 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 308441 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007815 other downstream 2477287 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 2713047 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007803 other downstream 3289167 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007863 other upstream 691103 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007873 other upstream 1253178 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 1749339 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007910 other upstream 2619665 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007913 other upstream 3061760 24967771 ~ 24967887 (-) True XLOC_004142

Expression Profile

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