XLOC_004121 (mdm4)


Basic Information

Item Value
gene id XLOC_004121
gene name mdm4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 22890997 ~ 22916641 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007865
GATCTGGCAACCGTGCTGACGTGACGACATACACCACGTCAACTTCAACTGTTCTACAAGAAATATCCCCACACACGTCTCCCTTTCTTTACACAAACGCTGATCCTTAATAACTGGAAACCATGTAATCGTTTACAGATAACACGTTTTTGAGTGAAAAATGACCTCATTGGCATCGTCATCTCAGTTACCGGGGTCATGCAGGACTCTTCCAGGGGAAGGGACTCAGGTCCACCCCAGAGCGCCTCTGCTGCAGATCTTGAAAGTAGCAGGTGCTCAGGAGGAGGTGTTTACCCTGAAGGAGGTCATGCATTATCTGGGTCAGTACATCATGATGAAGCAGCTGTATGACAAACAGAGGCAGCACATCGTCCACTGTCACGATGACCCACTGGGAGAGCTGCTGGAAGTGGGGAGCTTTTCTGTTAAAAACCCCAGCCCTGTGTATGAGATGTTGAAGAGGAATTTGGTAATTTTAAATAATTCGGATGCGGCAAAGAATCTTTCTGTCGGCAAGGATTCTAATGAGTCTCCAAGTGAAGATCCTGGTCAGGTGTCCAGTGAGTCAATAAACTCTGCTCAGCCTCTCATCGCTGGTAGTTCCAGTACTGGCACAACGCAGAGCTGCTCACAGCGTAGGCCACGTGATCCAGATGAAGACTCCTCAGATGGTTTGCCCAGGTCTGCCTGCAAACGACCAAAGCTGGACGTGACTCTGGAAGAGTGGGACCTTTCAGGGTTGCCTTGGTGGTTTTTGGGTAACTTGCGAAGTAATTACACTCGGCGGAGCAACGGTTCCACTGATATTCACACCAATCAAGACGAGGACACGGCCATCGTGTCTGACACCACAGATGATCTTTGGTTCCTGAATGAGGCAGAGAGCGAGCAGGTGAGCGTGGAGATGAAGGAGGCTGTGCTAGAACAGGGCAGTGATGGAGAGTCTCCGCATGAAGATGAGGACACTGGGAAAGACAGTAAAGATGATGGAAAgATGCAAGAAGAACAGGAGGAAGACTCTCAGTGTTTAAGTGATGACACAGATACTGAGATCTCCACACAGGATGCATGGCAGTGTTCAGAGTGCCGCAAGTTTAACACCCCTCTTCAGCGATACTGCATGCGCTGCTGGGCTCTGCGGAAAGACTGGTACAAGGATTGTCCTCGTCTCGTTCACTCCATCTCAGTGCCAGACATCCCTGCCTGCAGTTCACGTCCTGAGAGGGATGaagacgaggaggaggaggatgatgatggAATCGACATGCCTGACTGCCTCAGGACTGTGTCTGACCCAGTCGTCCTCCCATCGCATCGCGTCTCTAGAAACATCCCCTCATCATCCGCTTCCTCATCTAAAGGAAAGGGTCCTTCCCAGATTCACCATCACTTACAAGAGACATCAGAGGGGGATAGTCAGGACACTCTGGACATGGAGACCGAATATCAACCTGAGGCCTTGTTGGAACCCTGCAAGCTGTGTCGTGTGCGGCCGCGAAATGGGAACATCATCCATGGCAGAACGGCACACCTGATCACATGTTTCCCCTGTGCTCGCAAGCTGCACAAATTTCACGCTCCTTGCCCAGGCTGTGGCCAGGTTATACAGAAGGTCATCAAAACCTTCATTGCATGAGCAACAAATCTTTATTATAATTGCACACTCGCTCGCTTTCCAGATTGTACataaacaagcagaaaaaaaaaggacaaaacgATTCCTGGAGTTAAATGAAAGTATAGTACAGTGTATTTACGACCATTAAAGCCAAGTATAAGTAATGTACAGAATGTAATTTAAAGAAACTAGCCTCGCATTGATGGTTGCTTTGTTAACATTAAGAAATAGTGATCTCTACGGCTGCGTCTCAGGTAGAGGAGAAGGTTAGCAGCACGATTTGCTACTGCCTGAGTGGGAAGATATGAATCATGGGTCAGAAATAATAATGAACCCAAAAGAAATGCACGGCTGTGGTATTTGTGCCGGCATAAACAATTAAAATCCTAACCTTTTGTACTTTAGACAGTTTGTTCTAGAGCATTTAAAAGCCATGCAGTGCACTAGACTGACTttggttttactttattttaaaagaacAGACTATACATTTCCACCTCCCCCACCTTCTTGCAAATTGCAGGCACTTACAGACTAAAGCTTTAGGAGGCAATTCAGTGTGATGTTTAGCATATCTGGTGACATTTTCTTTAGACAGGTGCTTTAAACGGATTCAGttggaatatttatttatttatatagtttaatttTGTAGATGGGATCTCATGGGGTGACCAGTCATTGGCATTCCTGTGCTGTGGTGCAGAGAACCAGTTGTATTACAGATTTTGAAGTATTAAAACACCTCTTCATGTAGAGGTAATGCAAGAGGAAAGGATAATTAGGCTGATGACAACTGTTTTTGCTTCTTAAACCTTTTTTTGGTTACTCATGTGTCTCAACATTGCTTTTCTATATCTGTTTAGCactctgtgttgttttattttttatttgtaacacGCACATGTGCCTGTTTTATGAAGGTTAAGGGAAAAATATGAGAGCAGTTAGTGGAAGGatttagtcttgttttattttgagttgccaggtgagaaaaaaaaacactttgaaagAAACACCTGCTACAATTTGCCTTTTTTAATACAGTGATTTTGTTTCTTTGCAGAACGCCATCTGTATTGTTGGCAGTGTTAATTGAAATTAACAGAGCACTTCTGATGTGTGGGATTTTAGGTTTATTGTCCTCTGCTTTTCTGAATACTGCACCGTTTACTGCAGGAAGTCTCTTGTGCGTTATTTCAGTTCAACTAACACTGTTGTCCACAGCCACCAGAAGGCAAAAGAGCTTTTTACACAGTAAGCCCACTAGACTACCTTTTCCCATTTGTAATTAATTGTGTTATTTACTTTAAAGGGTTTGGAGGCTGTTTTTTTAAGCCTATCCAAATTGACCTGAGCGTTGTTGTGTGGTACAAGCACTGCTATATCACTGCCATTTTGCCTCATAGTATGGAACTTAAACATTCATCCTAAGCCAATGCAATCATAAGACGatgaagtttgttttgttttgttcacttgtttgttttatcaAGACCTGATGTTTGCAGAGATTTAATCGGAgctcatttttgtttgtttgtatttttaaattgtaaaataaaccaaTGGTAAGATGTTTTGGTACACTTGCAA
>TCONS_00007864
GATCTGGCAACCGTGCTGACGTGACGACATACACCACGTCAACTTCAACTGTTCTACAAGAAATATCCCCACACACGTCTCCCTTTCTTTACACAAACGCTGATCCTTAATAACTGGAAACCATGTAATCGTTTACAGATAACACGTTTTTGAGTGAAAAATGACCTCATTGGCATCGTCATCTCAGTTACCGGGGTCATGCAGGACTCTTCCAGGGGAAGGGACTCAGGTCCACCCCAGAGCGCCTCTGCTGCAGATCTTGAAAGTAGCAGGTGCTCAGGAGGAGGTGTTTACCCTGAAGGAGGTCATGCATTATCTGGGTCAGTACATCATGATGAAGCAGCTGTATGACAAACAGAGGCAGCACATCGTCCACTGTCACGATGACCCACTGGGAGAGCTGCTGGAAGTGGGGAGCTTTTCTGTTAAAAACCCCAGCCCTGTGTATGAGATGTTGAAGAGGAATTTGGTAATTTTAAATAATTCGGATGCGGCAAAGAATCTTTCTGTCGGCAAGGATTCTAATGAGTCTCCAAGTGAAGATCCTGGTCAGGTGTCCAGTGAGTCAATAAACTCTGCTCAGCCTCTCATCGCTGGTAGTTCCAGTACTGGCACAACGCAGAGCTGCTCACAGCGTAGGCCACGTGATCCAGATGAAGACTCCTCAGATGGTTTGCCCAGGTCTGCCTGCAAACGACCAAAGCTGGACGTGACTCTGGAAGAGTGGGACCTTTCAGGGTTGCCTTGGTGGTTTTTGGGTAACTTGCGAAGTAATTACACTCGGCGGAGCAACGGTTCCACTGATATTCACACCAATCAACTCTCTCCCGGACAGGACGAGGACACGGCCATCGTGTCTGACACCACAGATGATCTTTGGTTCCTGAATGAGGCAGAGAGCGAGCAGGTGAGCGTGGAGATGAAGGAGGCTGTGCTAGAACAGGGCAGTGATGGAGAGTCTCCGCATGAAGATGAGGACACTGGGAAAGACAGTAAAGATGATGGAAAgATGCAAGAAGAACAGGAGGAAGACTCTCAGTGTTTAAGTGATGACACAGATACTGAGATCTCCACACAGGATGCATGGCAGTGTTCAGAGTGCCGCAAGTTTAACACCCCTCTTCAGCGATACTGCATGCGCTGCTGGGCTCTGCGGAAAGACTGGTACAAGGATTGTCCTCGTCTCGTTCACTCCATCTCAGTGCCAGACATCCCTGCCTGCAGTTCACGTCCTGAGAGGGATGaagacgaggaggaggaggatgatgatggAATCGACATGCCTGACTGCCTCAGGACTGTGTCTGACCCAGTCGTCCTCCCATCGCATCGCGTCTCTAGAAACATCCCCTCATCATCCGCTTCCTCATCTAAAGGAAAGGGTCCTTCCCAGATTCACCATCACTTACAAGAGACATCAGAGGGGGATAGTCAGGACACTCTGGACATGGAGACCGAATATCAACCTGAGGCCTTGTTGGAACCCTGCAAGCTGTGTCGTGTGCGGCCGCGAAATGGGAACATCATCCATGGCAGAACGGCACACCTGATCACATGTTTCCCCTGTGCTCGCAAGCTGCACAAATTTCACGCTCCTTGCCCAGGCTGTGGCCAGGTTATACAGAAGGTCATCAAAACCTTCATTGCATGAGCAACAAATCTTTATTATAATTGCACACTCGCTCGCTTTCCAGATTGTACataaacaagcagaaaaaaaaaggacaaaacgATTCCTGGAGTTAAATGAAAGTATAGTACAGTGTATTTACGACCATTAAAGCCAAGTATAAGTAATGTACAGAATGTAATTTAAAGAAACTAGCCTCGCATTGATGGTTGCTTTGTTAACATTAAGAAATAGTGATCTCTACGGCTGCGTCTCAGGTAGAGGAGAAGGTTAGCAGCACGATTTGCTACTGCCTGAGTGGGAAGATATGAATCATGGGTCAGAAATAATAATGAACCCAAAAGAAATGCACGGCTGTGGTATTTGTGCCGGCATAAACAATTAAAATCCTAACCTTTTGTACTTTAGACAGTTTGTTCTAGAGCATTTAAAAGCCATGCAGTGCACTAGACTGACTttggttttactttattttaaaagaacAGACTATACATTTCCACCTCCCCCACCTTCTTGCAAATTGCAGGCACTTACAGACTAAAGCTTTAGGAGGCAATTCAGTGTGATGTTTAGCATATCTGGTGACATTTTCTTTAGACAGGTGCTTTAAACGGATTCAGttggaatatttatttatttatatagtttaatttTGTAGATGGGATCTCATGGGGTGACCAGTCATTGGCATTCCTGTGCTGTGGTGCAGAGAACCAGTTGTATTACAGATTTTGAAGTATTAAAACACCTCTTCATGTAGAGGTAATGCAAGAGGAAAGGATAATTAGGCTGATGACAACTGTTTTTGCTTCTTAAACCTTTTTTTGGTTACTCATGTGTCTCAACATTGCTTTTCTATATCTGTTTAGCactctgtgttgttttattttttatttgtaacacGCACATGTGCCTGTTTTATGAAGGTTAAGGGAAAAATATGAGAGCAGTTAGTGGAAGGatttagtcttgttttattttgagttgccaggtgagaaaaaaaaacactttgaaagAAACACCTGCTACAATTTGCCTTTTTTAATACAGTGATTTTGTTTCTTTGCAGAACGCCATCTGTATTGTTGGCAGTGTTAATTGAAATTAACAGAGCACTTCTGATGTGTGGGATTTTAGGTTTATTGTCCTCTGCTTTTCTGAATACTGCACCGTTTACTGCAGGAAGTCTCTTGTGCGTTATTTCAGTTCAACTAACACTGTTGTCCACAGCCACCAGAAGGCAAAAGAGCTTTTTACACAGTAAGCCCACTAGACTACCTTTTCCCATTTGTAATTAATTGTGTTATTTACTTTAAAGGGTTTGGAGGCTGTTTTTTTAAGCCTATCCAAATTGACCTGAGCGTTGTTGTGTGGTACAAGCACTGCTATATCACTGCCATTTTGCCTCATAGTATGGAACTTAAACATTCATCCTAAGCCAATGCAATCATAAGACGatgaagtttgttttgttttgttcacttgtttgttttatcaAGACCTGATGTTTGCAGAGATTTAATCGGAgctcatttttgtttgtttgtatttttaaattgtaaaataaaccaaTGGTAAGATGTTTTGGTACACTTGCAA
>TCONS_00008467
GGACAGGACGAGGACACGGCCATCGTGTCTGACACCACAGATGATCTTTGGTTCCTGAATGAGGCAGAGAGCGAGCAGGTGAGCGTGGAGATGAAGGAGGCTGTGCTAGAACAGGGCAGTGATGGAGAGTCTCCGCATGAAGATGAGGACACTGGGAAAGACAGTAAAGATGATGGAAAgATGCAAGAAGAACAGGAGGAAGACTCTCAGTGTTTAAGTGATGACACAGATACTGAGATCTCCACACAGgacagacTGACCTACCCAATTACAGACTTACCTTTTATAttaactaggcatgggccagtataaggttctgacggtatgataaccttggataaacatATATCAGGGTTTAACAGTATCaccgtattgtgattactgctctaaaataagttcttaaatgtctgtgtaaaaaatctaaacatttaaaatattttggaacagtaaatacGTCAGGCTAATTACTTAAAATGAATcacagacttctgctgtcttcatttgtttcaaaaacactgatttctttacaaattgaaaaa
>TCONS_00008468
CAGGTCCACCCCAGAGCGCCTCTGCTGCAGATCTTGAAAGTAGCAGGTGCTCAGGAGGAGGTGTTTACCCTGAAGGAGGTCATGCATTATCTGGGTCAGTACATCATGATGAAGCAGCTGTATGACAAACAGAGGCAGCACATCGTCCACTGTCACGATGACCCACTGGGAGAGCTGCTGGAAGTGGGGAGCTTTTCTGTTAAAAACCCCAGCCCTGTGTATGAGATGTTGAAGAGGAATTTGGTAATTTTAAATAATTCGGGTAAGTCCATCTCTTATGTTGTTGCTGAATTACTCTCTCAGAGATGCTTGTTTTGGATGATCTTGTGTATTAACTTGTCATGCTGTAATTGAGctctttttactttctttttcattttgattAGCCTTACCTTTAATTTtaagttgtatgtgtgtgtatgagtgttacGTTTGATATGGTGGGTATGCaatcttgtttttttaattaattttattatcatcTGAATAAAGTGCAGAATAACCTTCATACAGAAATGCAAGAAACCTAAcattaaaag

Function

symbol description
mdm4 Predicted to enable p53 binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process and regulation of cell cycle. Predicted to be active in nucleus. Orthologous to human MDM4 (MDM4 regulator of p53).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0071157 negative regulation of cell cycle arrest biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04115 p53 signaling pathway
ko05206 MicroRNAs in cancer
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-6872 Predicted to enable p53 binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process and regulation of cell cycle. Predicted to be active in nucleus. Orthologous to human MDM4 (MDM4 regulator of p53).

Ensembl:

ensembl_id ENSDARG00000057513

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007865 False 3214 mRNA 0.44 11 22890997 22916641
TCONS_00007864 False 3229 mRNA 0.44 11 22890997 22916641
TCONS_00008467 False 539 lncRNA 0.40 3 22905199 22905900
TCONS_00008468 True 539 lncRNA 0.40 3 22909764 22912113

Neighbor

gene id symbol gene type direction distance location
XLOC_004120 myog coding downstream 285016 22592935 ~ 22605981 (-)
XLOC_004119 tmem183a coding downstream 518925 22363572 ~ 22372072 (-)
XLOC_004118 tfeb coding downstream 529691 22287954 ~ 22361306 (-)
XLOC_004117 NA coding downstream 796600 22089435 ~ 22094397 (-)
XLOC_004116 NA coding downstream 984937 21893602 ~ 21906060 (-)
XLOC_004122 atp2b4 coding upstream 3946 22920587 ~ 23080970 (-)
XLOC_004123 CR555297.1 coding upstream 242548 23159189 ~ 23159307 (-)
XLOC_004124 optc coding upstream 289248 23205889 ~ 23219367 (-)
XLOC_004125 BX571675.2 coding upstream 389114 23305755 ~ 23309318 (-)
XLOC_004126 kiss1 coding upstream 394811 23311452 ~ 23322182 (-)
XLOC_004063 CR854846.1 misc downstream 6763319 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 10199306 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 10269230 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 10299701 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 10377735 12512966 ~ 12513262 (-)
XLOC_004115 CT573222.1 non-coding downstream 1138408 21752475 ~ 21752589 (-)
XLOC_004108 NA non-coding downstream 1771024 21117620 ~ 21119973 (-)
XLOC_004104 NA non-coding downstream 1937748 20952056 ~ 20953249 (-)
XLOC_004130 LO016980.1 non-coding upstream 738709 23655350 ~ 23655478 (-)
XLOC_004131 CR354444.1 non-coding upstream 983359 23900000 ~ 23901361 (-)
XLOC_004140 NA non-coding upstream 1793143 24709784 ~ 24714293 (-)

Expression


Co-expression Network