XLOC_004119 (tmem183a)


Basic Information

Item Value
gene id XLOC_004119
gene name tmem183a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 22363572 ~ 22372072 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007858
GAGAATGTACGCGACCTTGAGCGTCAGTTCCATAATGGCTGAAGATCCTGGAGGAGCTTTCTTTAATTTCACCCTCATTTTAACCGATTTTTCGTTACCTCTGCTGGAAAGATGGCAGGGCTAACAGCATCGATAAACGGCCACAGACCTTCGCTGTCGTCATGCCCAAGAAAGGGTACCGAAAACGGCTGAAATTTAGAGCCGATGATGTTTGCTCGGAGTCAGTAACTGTGGCTGACTATGCCAATGCCGATCCCGCCATCGTGAAGTCGGGAAGAGTTAAAAAGGCTGTTGCTAATGCAATTGAAAAAGAAGTGAAATTACTCTGTGGACTCGAGGCATCCCAGGGTCCTGTACAGGAAGTGCTCTCCTCTGCAGACTGTGTGAAAAATGTGGCTCATGAGAGTAGTGATGAACAGGACTCAGAGGAAGGGGACGAAATCAAAGGTTCccgtaaaaagaaaaacaaacgaCGCAAAGaAAACAGCGAGTGCATAAATGGAGAGGAGTATCCCATCGATATCTGGCTTGTGCTTGCTGCATACATTCGTCCAGAAGATGTCTGCACATTTTCTTTGATCTGCAAAAATGCATGGACTGCCACATGCACGGCTGCATTTTGGACACGTCTCTATAAAAGGCACTATAATCTTGACGCAGACCTTCCTGATCGTCTTCAGCCTGATTCTATCACAAGGATGCATTGTCTTCGTGCCCGTGTGATTCGCTCTCTCTTTCACTTATATGAGCCCTTTAGCTCTCGAGTGTCCAAAAGCCCTCCTCTCCCCGAATCTACACCCACTACACTCCTCAATTCCaagTGCTTGTTGTTTTGGGTCAACAAAGTGTCTGGAAGTAGGTCAGAGCAGATGTGGGAATTCAACTTCAAGTTTGTGAAACTGccaacCAAAGGCAAAAATGGATGTAATTTTGCTCTTCAGTTACCCAAGCAGTATAAGGATGTTCACACAAATCCAGACTCGGACTGTTATCTGCTGCGGGTCACTACCCTCAATTTCATTTTCACTTCTGTTGTGATGGGCATGACGTTAACTTTGTTCACCATTAATGTGAGCACAGACATGAGGCATCACCGAGTTCGGTTGGAGTTCCAGGATTCACCAATGATTCGGGGAAAAAAGCTCAGGGGTGAACAGGGGGTGCAGGTGGTGCTGGATCCCGTCCACAGCGTGCGTCTCATGGACTGGTGGCATCCTCAGTATCCCACATCTTTTCAATCACATCAATTAAACTGATGAACTCTCATCAAGCTTCTCTATTATAAAAACAATGCAGAAGGCAATTCGGGCCTCTTTCAACCAATGTTAAAGTcttgttttaacatttttcttttttttttattgatagtaCAGTTAGTGTGCTGCTTTAATGGACACTTAAGTTTTGATTGCTAGTCTTAACTCAAGGTGTCAAGCATTGGAGATGGAAATTGATGTTTGGGTAGGTGCCATGTTTAATTCCACACCAGTTACAACCAAGTTGATGTTCAATGGTTTCTATAGATTCACTGATTTTGTTTGTGGTTAAAAGCTTTTAAATATTGCATCTACTTCTGAAGTGCTTGGCATGCTTTTCTTGCCATTGAGGGTGTTGCAGTAATACTTTCAGCAAGTTCTTATAACCATAGGGGTGTAGGGTTTTGCATGAACCTAACCTTGAATCATGTGATTTAAATAGTCAGATGTTTGTGTTTTCTTAACTGTAGCATCCCCATGATTCATCTGCATCTGATTTTTCTCATTCTGTCTCTGCAAATGTAGGAAAGGGTGAACaagataaattaaaatataaatatatatatattaaaaaatacaagacCTGTTAAATCTGGAGAAATGTCTTGTATGTCTTTAGCTTGGTGTTAGATTAGGGTCaaaagtctgagatgattttatgcattcagttttttcttttGGGAATTAATGAGTTCAGTTTTGCTACAAAGTATGTTTGCCTAGCTGTATTTCTTATAATTGTCTGCTTTAGCAAGGGAGATTCGACACGTTGTAGACATTAAATTGTAGTTAAAAGAATGATGCTGTCTTTGGTTCAGGTTATTAAACATatagattaaataaatttatattttattggcACCATCAAA
>TCONS_00007859
TCTGCAAAAATGCATGGACTGCCACATGCACGGCTGCATTTTGGACACGTCTCTATAAAAGCTCTCGAGTGTCCAAAAGCCCTCCTCTCCCCGAATCTACACCCACTACACTCCTCAATTCCaagTGCTTGTTGTTTTGGGTCAACAAAGTGTCTGGAAGTAGGTCAGAGCAGATGTGGGAATTCAACTTCAAGTTTGTGAAACTGccaacCAAAGGCAAAAATGGATGTAATTTTGCTCTTCAGTTACCCAAGCAGTATAAGGATGTTCACACAAATCCAGACTCGGACTGTTATCTGCTGCGGGTCACTACCCTCAATTTCATTTTCACTTCTGTTGTGATGGGCATGACGTTAACTTTGTTCACCATTAATGTGAGCACAGACATGAGGCATCACCGAGTTCGGTTGGAGTTCCAGGATTCACCAATGATTCGGGGAAAAAAGCTCAGGGGTGAACAGGGGGTGCAGGTGGTGCTGGATCCCGTCCACAGCGTGCGTCTCATGGACTGGTGGCATCCTCAGTATCCCACATCTTTTCAATCACATCAATTAAACTGATGAACTCTCATCAAGCTTCTCTATTATAAAAACAATGCAGAAGGCAATTCGGGCCTCTTTCAACCAATGTTAAAGTcttgttttaacatttttcttttttttttattgatagtaCAGTTAGTGTGCTGCTTTAATGGACACTTAAGTTTTGATTGCTAGTCTTAACTCAAGGTGTCAAGCATTGGAGATGGAAATTGATGTTTGGGTAGGTGCCATGT
>TCONS_00007860
GATAATAAAGCTTCAACTGCAGGAATGATCAGACTAGTTCAATGATGTTTATGTCTGTGAAATTACTCTGTGGACTCGAGGCATCCCAGGGTCCTGTACAGGAAGTGCTCTCCTCTGCAGACTGTGTGAAAAATGTGGCTCATGAGAGTAGTGATGAACAGGACTCAGAGGAAGGGGACGAAATCAAAGGTTCccgtaaaaagaaaaacaaacgaCGCAAAGaAAACAGCGAGTGCATAAATGGAGAGGAGTATCCCATCGATATCTGGCTTGTGCTTGCTGCATACATTCGTCCAGAAGATGTCTGCACATTTTCTTTGATCTGCAAAAATGCATGGACTGCCACATGCACGGCTGCATTTTGGACACGTCTCTATAAAAGGCACTATAATCTTGACGCAGACCTTCCTGATCGTCTTCAGCCTGATTCTATCACAAGGATGCATTGTCTTCGTGCCCGTGTGATTCGCTCTCTCTTTCACTTATATGAGCCCTTTAGCTCTCGAGTGTCCAAAAGCCCTCCTCTCCCCGAATCTACACCCACTACACTCCTCAATTCCaagTGCTTGTTGTTTTGGGTCAACAAAGTGTCTGGAAGTAGGTCAGAGCAGATGTGGGAATTCAACTTCAAGTTTGTGAAACTGccaacCAAAGGCAAAAATGGATGTAATTTTGCTCTTCAGTTACCCAAGCAGTATAAGGATGTTCACACAAATCCAGACTCGGACTGTTATCTGCTGCGGGTCACTACCCTCAATTTCATTTTCACTTCTGTTGTGATGGGCATGACGTTAACTTTGTTCACCATTAATGTGAGCACAGACATGAGGCATCACCGAGTTCGGTTGGA

Function

symbol description
tmem183a Predicted to be involved in regulation of protein stability. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human TMEM183A (transmembrane protein 183A).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-5 Predicted to be involved in regulation of protein stability. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human TMEM183A (transmembrane protein 183A).

Ensembl:

ensembl_id ENSDARG00000044899

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007858 False 2125 mRNA 0.41 8 22363572 22372072
TCONS_00007859 False 778 mRNA 0.43 5 22364223 22369303
TCONS_00007860 True 850 mRNA 0.45 7 22364589 22371105

Neighbor

gene id symbol gene type direction distance location
XLOC_004118 tfeb coding downstream 2266 22287954 ~ 22361306 (-)
XLOC_004117 NA coding downstream 269175 22089435 ~ 22094397 (-)
XLOC_004116 NA coding downstream 457512 21893602 ~ 21906060 (-)
XLOC_004115 CT573222.1 coding downstream 610983 21752475 ~ 21752589 (-)
XLOC_004114 BX537291.1 coding downstream 751262 21582560 ~ 21612310 (-)
XLOC_004120 myog coding upstream 220863 22592935 ~ 22605981 (-)
XLOC_004121 mdm4 coding upstream 518925 22890997 ~ 22916641 (-)
XLOC_004122 atp2b4 coding upstream 548515 22920587 ~ 23080970 (-)
XLOC_004123 CR555297.1 coding upstream 787117 23159189 ~ 23159307 (-)
XLOC_004124 optc coding upstream 833817 23205889 ~ 23219367 (-)
XLOC_004063 CR854846.1 misc downstream 6235894 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 9671881 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 9741805 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 9772276 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 9850310 12512966 ~ 12513262 (-)
XLOC_004108 NA non-coding downstream 1243599 21117620 ~ 21119973 (-)
XLOC_004104 NA non-coding downstream 1410323 20952056 ~ 20953249 (-)
XLOC_004125 BX571675.2 non-coding upstream 933683 23305755 ~ 23309318 (-)
XLOC_004130 LO016980.1 non-coding upstream 1283278 23655350 ~ 23655478 (-)
XLOC_004131 CR354444.1 non-coding upstream 1527928 23900000 ~ 23901361 (-)
XLOC_004140 NA non-coding upstream 2337712 24709784 ~ 24714293 (-)

Expression


Co-expression Network