XLOC_004124 (optc)


Basic Information

Item Value
gene id XLOC_004124
gene name optc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 23205889 ~ 23219367 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007874
GCCTTCCCAATCTTGGGTTAGATTCAATACTCAATCCTCAGGAGAACACAAGGCCAGCTTCCACACCTCTTTTCCCGCAAGAGCTGCTTTTGGGCTATGGTGATTCAAAGACAAACATCAAAGATGTTGCTGTATCTTGTTTGGATTCTTCTGGGCTTCAGTCTTGGTGCCCCTCCAACTGATTTGGATCTTGAAGCATTTGGCCTGGAGAATTATGATGACCCAGACTCATGGGATCTGCACTATAATTATGATGATGAGCATGAGGAGGTTGAGACAGTAGCTCCTCCTACAGCTCTCACTCCTCCACCTGCTGTGGTTGTTCCTGAAAACTATGTGGAGGAAATGACTCTGCCACCTCGTCCCACGAAATCACCTGTTCCTTCAACTCTAGACTTCAAAGCACCAGGCCTGTTTGGACCTGACACAGGCTTAGGGATGCCCACAtgccttctgtgtgtgtgtatcagcggCAGCGTTTACTGCGATGACTCAGATCTGACTCATATTCCCCCTCTTCCCAAAGAAACCACACACTTTTACGCTCGCTTTAACAAGATCACAGAGATCAAAGCCGCAGACTTCATCAATCTCAATCAGTTAAAACGGATCGACCTTAGTGGAAACCAGATTGGTAAAGTGAACGAGGATGCTTTTCGTTCACTGCTTCAACTTCAGGATCTCATGATGGCTGACAACAACATCCAGGCTCTTCCTGAACTCCCAGCTTCCCTCAAGCACATCGACATCCGCAATAATAAGCTGAGGAGTTCAGGCATGCATGCTGAGGCCTTCAAGGAAATGAAGGAACTTCAATTTCTTTACCTGTCACACAACAAGTTAGACTACATTCCCGTACCCCTACCCGAGAGCCTGCGAGTGCTCCACCTGCAGAACAACAACATACAGAGCATAACCCAAGACACATTCTGCAACAGCCATGACAAGAACTACATACGGAAAGCCCTGGAGGACATCAGGCTTGACGGCAACCCGGTGGACATCAATCTTTACCCCCAGGCATATTTCTGCTTACCACGATTACCTGTAGGAACTCCAGTCTAAAACAGTGTCTCTCTCTTTTCAACAGGCTACGGAATAATAATATGAAGCGAGGAATTGAATTAGTTTAAAATGTCACCCAATCAATATCTAGGAGAAAGTTTTTAGCTTAAGTTTTCTTTTTGCAAGTCACTCTGTGCGTTATGACTTTGCACTTTGCAGGATGTACAAATGTTTGTGTTCCAAAATCTACTCCTTACCTACACTCAGATGCTAACTAAAATCCCAATTTACagagctcagcataattgagtacaccctattttgaaaatcaatatttttatttatttctcagagaatgtgggtaatatatattggtgcatttgaacaaaacaggttcattaaacagatatatttattaaaaa

Function

symbol description
optc Is expressed in several structures, including axis; floor plate; immature eye; paraxial mesoderm; and somite. Orthologous to human OPTC (opticin).

GO: NA

KEGG:

id description
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-030131-1798 Is expressed in several structures, including axis; floor plate; immature eye; paraxial mesoderm; and somite. Orthologous to human OPTC (opticin).

Ensembl:

ensembl_id ENSDARG00000014358

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007874 True 1427 mRNA 0.44 7 23205889 23219367

Neighbor

gene id symbol gene type direction distance location
XLOC_004123 CR555297.1 coding downstream 46582 23159189 ~ 23159307 (-)
XLOC_004122 atp2b4 coding downstream 124919 22920587 ~ 23080970 (-)
XLOC_004121 mdm4 coding downstream 289248 22890997 ~ 22916641 (-)
XLOC_004120 myog coding downstream 599908 22592935 ~ 22605981 (-)
XLOC_004119 tmem183a coding downstream 833817 22363572 ~ 22372072 (-)
XLOC_004125 BX571675.2 coding upstream 86388 23305755 ~ 23309318 (-)
XLOC_004126 kiss1 coding upstream 92085 23311452 ~ 23322182 (-)
XLOC_004127 golt1a coding upstream 108417 23327784 ~ 23332592 (-)
XLOC_004128 plekha6 coding upstream 123629 23342996 ~ 23525611 (-)
XLOC_004129 pik3c2b coding upstream 374470 23593837 ~ 23697217 (-)
XLOC_004063 CR854846.1 misc downstream 7078211 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 10514198 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 10584122 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 10614593 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 10692627 12512966 ~ 12513262 (-)
XLOC_004117 NA non-coding downstream 1111492 22089435 ~ 22094397 (-)
XLOC_004116 NA non-coding downstream 1299829 21893602 ~ 21906060 (-)
XLOC_004115 CT573222.1 non-coding downstream 1453300 21752475 ~ 21752589 (-)
XLOC_004108 NA non-coding downstream 2085916 21117620 ~ 21119973 (-)
XLOC_004130 LO016980.1 non-coding upstream 435983 23655350 ~ 23655478 (-)
XLOC_004131 CR354444.1 non-coding upstream 680633 23900000 ~ 23901361 (-)
XLOC_004140 NA non-coding upstream 1490417 24709784 ~ 24714293 (-)
XLOC_004141 CR628365.1 non-coding upstream 1599898 24819265 ~ 24820001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G249087 NA non-coding CI01000058 null 1838060 ~ 1844012 (-)