XLOC_004140


Basic Information

Item Value
gene id XLOC_004140
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24709784 ~ 24714293 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008469
ATGAAACCGTACCAATTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttgaTGGACATTGAATTTTCCAAGCTCACAGATAGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAAAATTGACATCAGACTCTTACTGAAGATGGCTGACAATCAGCATGATGATGAGCTGTTAAACTGTTAAAGATCCTTATTCATCTTCTTCCACCCACTGCCTCTGGGAGAAGTGTTGCTGGGAGTAAATGCTGTGTGACTTCTGCTGTGTCCTACCTGTTGGAGCAATTGCCGGTATAGTTTTTATTGGTTTAGcttatgataaataaaatgtttctaatgcagcaacaTTTTCTTATGCTTTTTATTGTTTCATTCCTGAAGGCTGGTACCACCGTTACATCTTTGCTCACTGAATCCATGAAAGGGACCCTGAAGTCAGCTCAGCCGCAGTTGGTTTCTATTGGTTGTCTAGGACATGGATCCTTGTACGTGTACGTGTACTTGTAGCTGTGGCAAAGAATGACTCTTTTGCTCTTTCACTCGATCCTGAAAGCCTGACCTGTGCTGTAGACAGACTTTTCAAATTCTTCTGGCTGTGCAATCTTCAGTATTCATGCCAActgtcttctgtttttttttttttttgagtatatatatatatatatatatatatatatatatatatatatatgtatatatatatatatatatatatatatatatatatatatatatatatatgacctgtCCTTGTCCCAGTCATCTTGCACACGATCAAAGGTCATGGAATTAATTGCTAAGGTGCAGTCTTGTACCTAATTGAAATAAGCATGTACACCTATCCAAAGtgtctttaaaatgattttgtaatTTGGCATTTAAGGGAAATGCATGCACTCTCTGATAGTCACAACCTAACTTTAATTTGTAGTCAAAATCGTTGCCCTAGAACATATCATAATTTAAATTCCTTTTTAAAACATCTCAAcagatcattttaaaattaattcatgCCCTTCTGAAGAGTCAAGACACACAGGGAACGAGAGTTTTAAGAGTTAAGTATTTTGAtgaacatattttttttcttcagtgtcaTCAGAACAAATCGTTTTCTCTTTGCTTTGCTGCCTGGGGACTTAATAGATTACAGACCTCTAGACATTTTGTCATTTTGTGATCAGCAGTATGTATCTcctaaatacaaaatattgttttaaacatgTTAGTGATTgaaactttggtaacactttataataactacacactataaatcatttattaagcattagcaaatggtgaattcattaatttgtaaagcgttaactctacattataagacattagcggttttacaaatgctgtattcttgacttataagtaaatgtttaatgtgcttaataattgtacctTCACACTTTGCTTCTGATTATTTTTTCACTACTAAATTAAGGACTGcgttatttacaaaccatttgtatttgaAAGTATGAATTATAAAAGTACAATTGttaggcacattataaatgtgcttataagtcaagaaaacAGCCTTTGTAGCTGTATTTAGAAACCCATTACTAATGTCTTATAATGTAgatttaatgcttaacaaatagtGAATTAACTACTGtacttgctaatgcttaataaataatttatattgtgtCGTTACTATAAAGGGTTACCTAaatgtttgaagtgttttgactAGATTTGacaatgatttattttgttaagACAAGCACCTTACATGTGGGTGAATGTATAATCAGTGTGCTATGGTTATTAATTTCTTTCACTAGAGAATAATTTTGAAAATGGATATGTTTCAtacatatttgacattttattggcATGCGTAACAGATACGAGTTCAATTTAATGAATACTTTTATAAAGTGAGTTTTTATATTATGTACAATGAATTGCTGTAAAACATTTGAATGCATTTGGGAAAATTAAACAGTATGTGAACAGTGTTTAATGTTTCCTGTGAG
>TCONS_00008470
ttttttagctATCCTTCTGGTATAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTCAGGTGCCCTTTGGTGAAAATGAGGGACATGAGAATgccATCACACAGTCGGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAAGTGAGTTGTTGTCTCTGATAAAGAAGATGCGACCAGACAATTTATCATCAATAAAGACTGCAATCAATCAAAACTTCAGTTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttgaTGGACATTGAATTTTCCAAGCTCACAGATAGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAAAATTGACATCAGACTCTTACTGAAGATGGCTGACAATCAGCATGATGATGAGCTGTTAAACTGTTAAAGATCCTTATTCATCTTCTTCCACCCACTGCCTCTGGGAGAAGTGTTGCTGGGAGTAAATGCTGTGTGACTTCTGCTGTGTCCTACCTGTTGGAGCAATTGCCGGTATAGTTTTTATTGGTTTAGcttatgataaataaaatgtttctaatgcagcaacaTTTTCTTATGCTTTTTATTGTTTCATTCCTGAAGGCTGGTACCACCGTTACATCTTTGCTCACTGAATCCATGAAAGGGACCCTGAAGTCAGCTCAGCCGCAGTTGGTTTCTATTGGTTGTCTAGGACATGGATCCTTGTACGTGTACGTGTACTTGTAGCTGTGGCAAAGAATGACTCTTTTGCTCTTTCACTCGATCCTGAAAGCCTGACCTGTGCTGTAGACAGACTTTTCAAATTCTTCTGGCTGTGCAATCTTCAGTATTCATGCCAActgtcttctgtttttttttttttttgagtatatatatatatatatatatatatatatatatatatatatatgtatatatatatatatatatatatatatatatatatatatatatatatatgacctgtCCTTGTCCCAGTCATCTTGCACACGATCAAAGGTCATGGAATTAATTGCTAAGGTGCAGTCTTGTACCTAATTGAAATAAGCATGTACACCTATCCAAAGtgtctttaaaatgattttgtaatTTGGCATTTAAGGGAAATGCATGCACTCTCTGATAGTCACAACCTAACTTTAATTTGTAGTCAAAATCGTTGCCCTAGAACATATCATAATTTAAATTCCTTTTTAAAACATCTCAAcagatcattttaaaattaattcatgCCCTTCTGAAGAGTCAAGACACACAGGGAACGAGAGTTTTAAGAGTTAAGTATTTTGAtgaacatattttttttcttcagtgtcaTCAGAACAAATCGTTTTCTCTTTGCTTTGCTGCCTGGGGACTTAATAGATTACAGACCTCTAGACATTTTGTCATTTTGTGATCAGCAGTATGTATCTcctaaatacaaaatattgttttaaacatgTTAGTGATTgaaactttggtaacactttataataactacacactataaatcatttattaagcattagcaaatggtgaattcattaatttgtaaagcgttaactctacattataagacattagcggttttacaaatgctgtattcttgacttataagtaaatgtttaatgtgcttaataattgtacctTCACACTTTGCTTCTGATTATTTTTTCACTACTAAATTAAGGACTGcgttatttacaaaccatttgtatttgaAAGTATGAATTATAAAAGTACAATTGttaggcacattataaatgtgcttataagtcaagaaaacAGCCTTTGTAGCTGTATTTAGAAACCCATTACTAATGTCTTATAATGTAgatttaatgcttaacaaatagtGAATTAACTACTGtacttgctaatgcttaataaataatttatattgtgtCGTTACTATAAAGGGTTACCTAaatgtttgaagtgttttgactAGATTTGacaatgatttattttgttaagACAAGCACCTTACATGTGGGTGAATGTATAATCAGTGTGCTATGGTTATTAATTTCTTTCACTAGAGAATAATTTTGAAAATGGATATGTTTCAtacatatttgacattttattggcATGCGTAACAGATACGAGTTCAATTTAATGAATACTTTTATAAAGTGAGTTTTTATATTATGTACAATGAATTGCTGTAAAACATTTGAATGCATTTGGGAAAATTAAACAGTATGTGAACAGTGTTTAATGTTTCCTGTGAG
>TCONS_00008795
TTAATATTGTGCTTAACTGTTTACACAATGACTgtgttaaacacatttaaacagtaTGTTGGAATACAATGCATTTTTGCCTGTAGTCAAATGGCACTGTGTTATGAgtttatgtagtttatttatcatgatggtaatataaaataagcatttgTGAGTATGTGGCTAAAAATTCTATATTTCGGGGTTTATACTGTGAATTTCTGCACGCGCATGCGCAGTGACGTTCTTTTTCAACTGACGCTCTCCCAGAGCTCTATCGGATAACGCACCTCTCTGCCTCAGGTGAGTGAAATTCATTAAAATTCGTCTACGATAGTAAATATTTCTTCCACTCTGCGTGagaatgttttgtgtttgttgtccaagaagttatttttgttacttttattatgttttcatgTTTCGTACTCCTGATACACGGGACTTGGCAACTCTGTCATGTAACATTAACTTTAGCCGCGCAAGCTAACGCATCTGGCGCGTCTTTTGTAAAGCTGCGTTGGCACTTGGCAGAATTGTTAATAATAAGTTACATATAAGGCGAAAGACTTACCCTAAATATGTACTGCATTTTGGTGTAAGAGTTGCCGTCACTTTAAAAAGCCTCTGCGTCTCTGACACTCGAGGTAACGCTACCAGATATAATTTATGCATTTAACGTTACGTTATTATCATAAGGTTATTTAATATATAACCTTATATGAAGCTCTGCGGCAGGAATTTAAACATAAATCCCTTGTCGTAACGTTAGTTGGGTGCTTTGTACAGACACCAATTGGCGCCGAGGTGTGAGCAAATTCATAAACAATAGCTAAAATATGAAGATCTTTAATGTACTCAATTTTGCGCGCCATTTTGTGGTACCCTACTAGTCGCATACTAtttaaaagtgtactttttaTTGTCATACACAGTTACAGGTGTTTGTTTTCTCATTGTGCTGTATGAATTTCTCTCTTAGGAGATGGAAGTCGAGGAACAAATTACAGTCACTCTTAACACTTCTACACCGCGTTCTTGCAACTGTCTTCATAGACAGAAAGGAAATATGGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACAGGTCTCAACTATCTTTTGATTGAATATTGAAATTTGACAGATTTTCAAGTTCATTGACACTGATGTAAATGCAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAATACCCCGGACTCATTAGAAAGAAGTGTGCACTCATTACAggtaaaacatttatatatttctccctttatattactatagataaacgtaaacatttaaataaataaaatgttttggcaTTTCTTAGTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTGTGAGTATGTGGTTTGTTTATTTCATGTAAGATGTATTTatttgcaaattaaataaattacatttatttaaataagttatatattaaaataaattctacatttaaaaaatatttcaaataaatacatttaacaatttaTGCCAATCAATTCTGAAGTACCACTGTTTAGTCAATTTTTTGTTTGTCAATGTTTGTGTATAAGCAATTTAtgcaactgtatttttttttttacttttttagctATCCTTCTGGTATAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTCAGGTGCCCTTTGGTGAAAATGAGGGACATGAGAATGTaagaatgtttttaaattataaactgaATTTATTAGGAATGTGTATATAAGTTGCTCATTTATTTGACTTTCATTagttctgtttttacattactaatctcaggaggatttttttttttttttgctaggccATCACACAGTCGGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAAGTGAGTTGTTGTCTCTGATAAAGAAGATGCGACCAGACAATTTATCATCAATAAAGACTGCAATCAATCAAAACTTCAGTTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttggtaatagacatgctcaaCTAAGACAGAACTTTAcacagacatttatttcataattgtaatattaatatttctttgtttctgatttctttctttctttaaagaTGGACATTGAATTTTCCAAGCTCACAGATAGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAAAATTGACATCAGACTCTTACTGAAGATGGCTGACAATCAGCATGATGGTATGAGTTTCAGCCAAAATATCTGTTGCATGTGCACACTTttctaaaaatagtttaaaagatAAAACTTAATGTGAATATTAATATTCTATTAAAGATATTAATttctaatatattttgtttaaattcttATTTTGCATGTGACCTGTATCTTCACTTCAAGATGAGCTGTTAAACTGTTAAAGATCCTTATTCATCTTCTTCCACCCACTGCCTCTGGGAGAAGTGTTGCTGGGAGTAAATGCTGTGTGACTTCTGCTGTGTCCTACCTGTTGGAGCAATTGCCGGTATAGTTTTTATTGGTTTAGcttatgataaataaaatgtttctaatgcagcaacaTTTTCTTATGCTTTTTATTGTTTCATTCCTGAAGGCTGGTACCACCGTTACATCTTTGCTCACTGAATCCATGAAAGGGACCCTGAAGTCAGCTCAGCCGCAGTTGGTTTCTATTGGTTGTCTAGGACATGGATCCTTGTACGTGTACGTGTACTTGTAGCTGTGGCAAAGAATGACTCTTTTGCTCTTTCACTCGATCCTGAAAGCCTGACCTGTGCTGTAGACAGACTTTTCAAATTCTTCTGGCTGTGCAATCTTCAGTATTCATGCCAActgtcttctgtttttttttttttttgagtatatatatatatatat
>TCONS_00008471
TGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTGTGActATCCTTCTGGTATAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTCAGGTGCCCTTTGGTGAAAATGAGGGACATGAGAATgccATCACACAGTCGGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAAGTGAGTTGTTGTCTCTGATAAAGAAGATGCGACCAGACAATTTATCATCAATAAAGACTGCAATCAATCAAAACTTCAGTTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttgaTGGACATTGAATTTTCCAAGCTCACAGATAGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAAAATTGACATCAGACTCTTACTGA
>TCONS_00008472
CTTTGGACACATTGTGTGTTAATATTGTGCTTAACTGTTTACACAATGACTgtgttaaacacatttaaacagtaTGTTGGAATACAATGCATTTTTGCCTGTAGTCAAATGGCACTGTGTTATGAgtttatgtagtttatttatcatgatggtaatataaaataagcatttgTGAGTATGTGGCTAAAAATTCTATATTTCGGGGTTTATACTGTGAATTTCTGCACGCGCATGCGCAGTGACGTTCTTTTTCAACTGACGCTCTCCCAGAGCTCTATCGGATAACGCACCTCTCTGCCTCAGGAGATGGAAGTCGAGGAACAAATTACAGTCACTCTTAACACTTCTACACCGCGTTCTTGCAACTGTCTTCATAGACAGAAAGGAAATATGGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAATACCCCGGACTCATTAGAAAGAAGTGTGCACTCATTACAggtaaaacatttatatatttctccctttatattactatag

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0006413 translational initiation biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008469 False 2097 lncRNA 0.32 4 24709784 24712223
TCONS_00008470 False 2375 lncRNA 0.33 4 24709784 24712551
TCONS_00008795 False 3157 lncRNA 0.35 1 24711119 24714275
TCONS_00008471 False 653 lncRNA 0.41 4 24711804 24712922
TCONS_00008472 True 573 lncRNA 0.37 3 24712969 24714293

Neighbor

gene id symbol gene type direction distance location
XLOC_004139 olfml3b coding downstream 28492 24671676 ~ 24681292 (-)
XLOC_004138 plekhg5a coding downstream 170924 24464356 ~ 24538860 (-)
XLOC_004137 mxra8a coding downstream 250998 24429923 ~ 24458786 (-)
XLOC_004136 dvl1b coding downstream 281465 24360744 ~ 24428319 (-)
XLOC_004135 si:ch211-15p9.2 coding downstream 362140 24345697 ~ 24347644 (-)
XLOC_004141 CR628365.1 coding upstream 104972 24819265 ~ 24820001 (-)
XLOC_004142 CR628365.2 coding upstream 253478 24967771 ~ 24967887 (-)
XLOC_004143 myh7ba coding upstream 467593 25181886 ~ 25213689 (-)
XLOC_004144 dre-mir-499 coding upstream 490860 25205153 ~ 25205243 (-)
XLOC_004145 snai1a coding upstream 537202 25251495 ~ 25257595 (-)
XLOC_004063 CR854846.1 misc downstream 8582106 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 12018093 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 12088017 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 12118488 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 12196522 12512966 ~ 12513262 (-)
XLOC_004131 CR354444.1 non-coding downstream 808423 23900000 ~ 23901361 (-)
XLOC_004130 LO016980.1 non-coding downstream 1054306 23655350 ~ 23655478 (-)
XLOC_004125 BX571675.2 non-coding downstream 1400466 23305755 ~ 23309318 (-)
XLOC_004123 CR555297.1 non-coding downstream 1550477 23159189 ~ 23159307 (-)
XLOC_004117 NA non-coding downstream 2615387 22089435 ~ 22094397 (-)
XLOC_004147 NA non-coding upstream 653819 25368112 ~ 25408896 (-)
XLOC_004150 NA non-coding upstream 761012 25475305 ~ 25476980 (-)

Expression


Co-expression Network