XLOC_004139 (olfml3b)


Basic Information

Item Value
gene id XLOC_004139
gene name olfml3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24671676 ~ 24681292 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007911
CTCAAAACCTTTGCATGAGGGCTTTTCCTCTCtgcctgtcacacacacacactcaccgttTCCAAGCAGTCTTCTTCAGTCTTCAAGATGAGAGCTCTCCAGCTCCTTGTCCTTGTTCTTTCTGGGTTAGTCGGGGCACAGCAGCAGGCCCTTATGGACTACTTGGAGAGAAGACTCCTTGCTATTGAGGATCGCATCTCCTTGTGGCATGAGCAGACCAGCCGCTATGCCTCTGAGCTGCGCGAGTTCAAGCAGCAGATGGTGGCACAGCTAGAGGGCCTGGACAAGAGCAAGGAGGCGCTGCGGAGCGAGTTGGACACTGTGGGAACACGCGTAGATCGCGTGGAGAGAGAGATGGACTACCTCGAAACACAGAATGGCGCGCAGCCTTGTGTGGATGTAGATGACAAGCTGGTGGAGCAGCAGGTGACGTTTGTCAAGGAGAGAAACAAAGCTAAGTACGCCAAGCTTACAGACTGCAGTGATATGATCTCCAGCATCAAAGCCATGAAGATCCTCAAACGAGTGGGCGGTGCTAAGGGCATGTGGACCAAGGACATGGGAAGCGCCACTGGGAAAGTGTACATCCTAAACGGGACTGATGATAATACAGTATTTGAATTTGGGACAGTCCGTGAATTCACGTCCTCCCAAGGCACTTCTGGAGCCACCACTATACAGCTCCCTTCGGCCTGGCGTGGAATGGGCCACGCCATCTACAACAACCACATGTACTACCTGAAGCAGGGCGAAGAGATGAAACTAATAAAGTTTGATCTCCAGAAGAACATAATTGTGGACAGTGCTGTTTTTCCAGTTAAAAACCAGCTCCCCGTATACAGCCTGAATCCCGAGACCTTCATTGATTTAGCAGTGGATGAAGAGGGACTGTGGGCAATCTATGCCACTCAGGAAAACGAGCGGCACATCTCTTTGGCCAAGATAGACCCCAAAACGCTAGACATCCAGCAGATGTGGGACACCCCTTGTGTGAGGGAGAATGCAGAGGCAGCATTTGTCATCTGCGGGACTGTCTATGTGGTCTACAACTCCAAATTACCCAGTCGATCTCGCATTCAGTGTGTGTTTGACGTCAGTGATATGGTCAACAATGATGAAGCTCCACATGTATACTTTCCAAAGCGATATGGCACCCATTCCAGCCTCAAATACAGCCCTGTGGAACAGCTGCTCTACGCTTGGGACGATGGCTATCAAATCCTCTACAAACTCCAACTAAAAAAGAAGCTAGAGGTGTAGAAGGCTGACTGAAATGCCCATGTTATTGGCTTAATTATCTTATTCAACCTGGTTAAGTCATTTCAATATGTTTGAGCTTTGTATTTACACAGAAAACACAACATATGATTGGTTGGACACATTTGTTTTGTTAAGACTTTACTAGAAATTAAtgtacagggctcaacaatgAACACTTTATCTCAGTTTGCCTGGAGCAGAACTAATAAATGATTTCATATGTTATGTTAATATCAAGTACATACtttcaataaataatttcacAAATACATCTATTATA

Function

symbol description
olfml3b Predicted to be located in extracellular region. Orthologous to human OLFML3 (olfactomedin like 3).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005576 extracellular region cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050302-161 Predicted to be located in extracellular region. Orthologous to human OLFML3 (olfactomedin like 3).

Ensembl:

ensembl_id ENSDARG00000062171

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007911 True 1540 mRNA 0.47 3 24671676 24681292

Neighbor

gene id symbol gene type direction distance location
XLOC_004138 plekhg5a coding downstream 132816 24464356 ~ 24538860 (-)
XLOC_004137 mxra8a coding downstream 212890 24429923 ~ 24458786 (-)
XLOC_004136 dvl1b coding downstream 243357 24360744 ~ 24428319 (-)
XLOC_004135 si:ch211-15p9.2 coding downstream 324032 24345697 ~ 24347644 (-)
XLOC_004134 sox12 coding downstream 479748 24187610 ~ 24191928 (-)
XLOC_004140 NA coding upstream 28492 24709784 ~ 24714293 (-)
XLOC_004141 CR628365.1 coding upstream 137973 24819265 ~ 24820001 (-)
XLOC_004142 CR628365.2 coding upstream 286479 24967771 ~ 24967887 (-)
XLOC_004143 myh7ba coding upstream 500594 25181886 ~ 25213689 (-)
XLOC_004144 dre-mir-499 coding upstream 523861 25205153 ~ 25205243 (-)
XLOC_004063 CR854846.1 misc downstream 8543998 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 11979985 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 12049909 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 12080380 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 12158414 12512966 ~ 12513262 (-)
XLOC_004131 CR354444.1 non-coding downstream 770315 23900000 ~ 23901361 (-)
XLOC_004130 LO016980.1 non-coding downstream 1016198 23655350 ~ 23655478 (-)
XLOC_004125 BX571675.2 non-coding downstream 1362358 23305755 ~ 23309318 (-)
XLOC_004123 CR555297.1 non-coding downstream 1512369 23159189 ~ 23159307 (-)
XLOC_004117 NA non-coding downstream 2577279 22089435 ~ 22094397 (-)
XLOC_004147 NA non-coding upstream 686820 25368112 ~ 25408896 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02601172_02604783 OLFML3B, OLFML3 coding CI01000306 null 2601000 ~ 2604783 (-)