XLOC_004136 (dvl1b)


Basic Information

Item Value
gene id XLOC_004136
gene name dvl1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24360744 ~ 24428319 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007900
tttattgtcgCCGCACGTCTGGACTGGCAGGCAGCATCAGGAACACGCGCTGTTCTCCGGCAATTGTTCTCACCATATTCTCATGGCGGAGACTAAAATCATATACCACATAGACGAGGAGGAAACTCCCTATTTAGTCAAACTGTCAGTGGCTCCGGAGAAGGTAACTTTGGCGGATTTCAAAAATGTCCTCAGCAACCGACCGGTCAACAGCTATAAATTCTTCTTCAAATCTATGGACCAGGATTTCGGGGTTGTCAAAGAAGAAGTCTCGGACGACAACGCCAAACTGCCTTGTTTCAATGGGAGAGTGGTGTCATGGCTTGTACTGGCCGAGAGCTCTCACACAGATGGGATGTCAGTGTGCACTGACAGTCATACTGAACATCCACCACCACTGGAGAGGACAGGAGGCATTGGGGACTCCAGACCGCCCTCATTCCAtgcgAATGCAGTGAACAGCAGAGATGGACTGGACACAGAAACTGGAAGCGAGCCTGTTCTTCGTCATCGTCGAGAGAGGGAACGAGAAAGAACCAGACGGAGGAGAGATGATTTCCCACGTCTGAACGGTCACTCTAAAGCTGAGCGGGTGGTAAGGGACTCAGCCATGGGTTGTGACAGCGGCTCCATCATGAGCAGTGAGCTGGAGTCGAGCTCTTTCATTGACAGCGAAGATGAGGAGGACGCAAGCAGGCTGAGCAGTTCCACAGAGCAGAGTTCTTCTTTTCAGTTAATGAAGAGACATAAACGCAGACGCCGGCGACACAAAGTGGCTAAAATTGataggTCATCCTCCTTCAGCAGTATCACAGATTCAACTATGAGCCTCAACATCATCACAGTTACTCTAAATATGGAGAAATACAACTTTCTGGGCATCAGTATAGTGGGCCAAAGCAATGATAGAGGAGACGGTGGCATCTACATTGGATCAATTATGAAGGGAGGAGCAGTGGCAGCAGATGGGAGGATAGAGCCAGGAGACATGCTGCTGCAGGTAAATGATGTCAACTTTGAAAACATGAGTAATGATGATGCAGTCAGGATCCTCAGAGAGATCGTCTCCAAAAATGGTCCCATCAGTCTCACTGTTGCCAAATGCTGGGACCCTTCCCCTCGCAGTTACTTTACAATACCCAGAGCTGAACCAGTCCGGCCCATTGACCCAGCAGCATGGATTTCACACACTACTGCACTTACGGGATCTTACCCACAAAACGAGTTTGATGAACTCCCTCTTACAATGGGGAAGACAGACATGGCCACCATAGTAAAGGTGATGCAGTTGCCTGACTCAGGACTAGAAATAAGGGACAGAATGTGGCTGAAGATCACTATAGCTAATGCAGTTATAGGAGGTGATGTCGTAGACTGGCTTTACTCAAGGGTGGAAGGATTCAAAGACCGCCGGGATGCCAGAAAATACGCCAGCAGCTTGCTGAAACACGGCTATCTCAGACACACTGTCAACAAGATCACATTCTCTGAACAGTGTTACTACACGTTTGGAGATCTCTGCCAAAACATGGCTACGTTAAACTTGAATGAGGGATCGAGTGGTGCTGGTTCAGAGCAGGACACTTtggctcctcttcctcctccgtCCACTAACCCGTGGCCCATGGGTGGCCAGCCATTCCCTTACCCACCCTTCACAGCGCCCCCTGCTTTCCCTCCAGGATATTCAGACCCCTGCCACAGTTTCCACAGTGGCAGCGCTGGAAGTCATCACAGTGAGGGAAGTCGCAGCAGTAGTTCCAACCCTAGCATTGGGAGAATCCAGCGGGCCGTACAGAGGGAAAAGGAGCGCAAATCAACAGGCAGCGAATCAGATTCAGGCAAGCGAGCAGGAGGGAGGAGGGTTGAGCGTTCAGCCAGCCAACTCAGCCACCGCAGCCACGCCCTGTCATCCCGTAGCCACACCCACTCACGAGTCCCCTCACAGCACAGCCGTACTTCCTTCTCCTACAGCCACGCCCCTTTTACCAAATATGGCCACACGTCCTGTGCACTCAGCGAACGGAGCCACGCCTCTTCTTATGGGCCCCCAGGTCTGCCTCCTCCATACAGCCTGGCTAGATTGACTCCTAAAGGGGCCGTCTGCAGTGGGCCCCCGGGGGCCCCTCCAGTGAGGGAAATGGGGGCCATACCACCTGAACTCACCGCCAGTCGACAGTCCTTCCAGCATGCAATGGGCAACCCTTGTGAGTTTTTTGTGGATATTATGTAAAATCTAATAGCACTGCGCTGAAATCCA
>TCONS_00007901
ATGGCGGAGACTAAAATCATATACCACATAGACGAGGAGGAAACTCCCTATTTAGTCAAACTGTCAGTGGCTCCGGAGAAGGTAACTTTGGCGGATTTCAAAAATGTCCTCAGCAACCGACCGGTCAACAGCTATAAATTCTTCTTCAAATCTATGGACCAGGATTTCGGGGTTGTCAAAGAAGAAGTCTCGGACGACAACGCCAAACTGCCTTGTTTCAATGGGAGAGTGGTGTCATGGCTTGTACTGGCCGAGAGCTCTCACACAGATGGGATGTCAGTGTGCACTGACAGTCATACTGAACATCCACCACCACTGGAGAGGACAGGAGGCATTGGGGACTCCAGACCGCCCTCATTCCAtgcgAATGCAGTGAACAGCAGAGATGGACTGGACACAGAAACTGGAAGCGAGCCTGTTCTTCGTCATCGTCGAGAGAGGGAACGAGAAAGAACCAGACGGAGGAGAGATGATTCTGAGCGGGTGGTAAGGGACTCAGCCATGGGTTGTGACAGCGGCTCCATCATGAGCAGTGAGCTGGAGTCGAGCTCTTTCATTGACAGCGAAGATGAGGAGGACGCAAGCAGGCTGAGCAGTTCCACAGAGCAGAGTTCTTCTTTTCAGTTAATGAAGAGACATAAACGCAGACGCCGGCGACACAAAGTGGCTAAAATTGataggTCATCCTCCTTCAGCAGTATCACAGATTCAACTATGAGCCTCAACATCATCACAGTTACTCTAAATATGGAGAAATACAACTTTCTGGGCATCAGTATAGTGGGCCAAAGCAATGATAGAGGAGACGGTGGCATCTACATTGGATCAATTATGAAGGGAGGAGCAGTGGCAGCAGATGGGAGGATAGAGCCAGGAGACATGCTGCTGCAGGTAAATGATGTCAACTTTGAAAACATGAGTAATGATGATGCAGTCAGGATCCTCAGAGAGATCGTCTCCAAAAATGGTCCCATCAGTCTCACTGTTGCCAAATGCTGGGACCCTTCCCCTCGCAGTTACTTTACAATACCCAGAGCTGAACCAGTCCGGCCCATTGACCCAGCAGCATGGATTTCACACACTACTGCACTTACGGGATCTTACCCACAAAACGAGTTTGATGAACTCCCTCTTACAATGGGGAAGACAGACATGGCCACCATAGTAAAGGTGATGCAGTTGCCTGACTCAGGACTAGAAATAAGGGACAGAATGTGGCTGAAGATCACTATAGCTAATGCAGTTATAGGAGGTGATGTCGTAGACTGGCTTTACTCAAGGGTGGAAGGATTCAAAGACCGCCGGGATGCCAGAAAATACGCCAGCAGCTTGCTGAAACACGGCTATCTCAGACACACTGTCAACAAGATCACATTCTCTGAACAGTGTTACTACACGTTTGGAGATCTCTGCCAAAACATGGCTACGTTAAACTTGAATGAGGGATCGAGTGGTGCTGGTTCAGAGCAGGACACTTtggctcctcttcctcctccgtCCACTAACCCGTGGCCCATGGGTGGCCAGCCATTCCCTTACCCACCCTTCACAGCGCCCCCTGCTTTCCCTCCAGGATATTCAGACCCCTGCCACAGTTTCCACAGTGGCAGCGCTGGAAGTCATCACAGTGAGGGAAGTCGCAGCAGTAGTTCCAACCCTAGCATTGGGAGAATCCAGCGGGCCGTACAGAGGGAAAAGGAGCGCAAATCAACAGGCAGCGAATCAGATTCAGGCAAGCGAGCAGGAGGGAGGAGGGTTGAGCGTTCAGCCAGCCAACTCAGCCACCGCAGCCACGCCCTGTCATCCCGTAGCCACACCCACTCACGAGTCCCCTCACAGCACAGCCGTACTTCCTTCTCCTACAGCCACGCCCCTTTTACCAAATATGGCCACACGTCCTGTGCACTCAGCGAACGGAGCCACGCCTCTTCTTATGGGCCCCCAGGTCTGCCTCCTCCATACAGCCTGGCTAGATTGACTCCTAAAGGGGCCGTCTGCAGTGGGCCCCCGGGGGCCCCTCCAGTGAGGGAAATGGGGGCCATACCACCTGAACTCACCGCCAGTCGACAGTCCTTCCAGCATGCAATGGGCAACCCTTGTGAGTTTTTTGTGGATATTATGTAA

Function

symbol description
dvl1b Predicted to enable frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway and planar cell polarity pathway involved in neural tube closure. Predicted to act upstream of or within Wnt signaling pathway and intracellular signal transduction. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in DiGeorge syndrome and autosomal dominant Robinow syndrome 2. Orthologous to human DVL1 (dishevelled segment polarity protein 1).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0090179 planar cell polarity pathway involved in neural tube closure biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0005109 frizzled binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-1 Predicted to enable frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway and planar cell polarity pathway involved in neural tube closure. Predicted to act upstream of or within Wnt signaling pathway and intracellular signal transduction. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in DiGeorge syndrome and autosomal dominant Robinow syndrome 2. Orthologous to human DVL1 (dishevelled segment polarity protein 1).

Ensembl:

ensembl_id ENSDARG00000055552

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007900 False 2260 mRNA 0.52 15 24360744 24428319
TCONS_00007901 True 2124 mRNA 0.52 15 24360771 24428237

Neighbor

gene id symbol gene type direction distance location
XLOC_004135 si:ch211-15p9.2 coding downstream 13100 24345697 ~ 24347644 (-)
XLOC_004134 sox12 coding downstream 168816 24187610 ~ 24191928 (-)
XLOC_004133 trib3 coding downstream 297548 24058530 ~ 24063196 (-)
XLOC_004132 chia.3 coding downstream 343931 24013769 ~ 24016813 (-)
XLOC_004131 CR354444.1 coding downstream 459383 23900000 ~ 23901361 (-)
XLOC_004137 mxra8a coding upstream 1604 24429923 ~ 24458786 (-)
XLOC_004138 plekhg5a coding upstream 36037 24464356 ~ 24538860 (-)
XLOC_004139 olfml3b coding upstream 243357 24671676 ~ 24681292 (-)
XLOC_004140 NA coding upstream 281465 24709784 ~ 24714293 (-)
XLOC_004141 CR628365.1 coding upstream 390946 24819265 ~ 24820001 (-)
XLOC_004063 CR854846.1 misc downstream 8233066 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 11669053 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 11738977 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 11769448 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 11847482 12512966 ~ 12513262 (-)
XLOC_004130 LO016980.1 non-coding downstream 705266 23655350 ~ 23655478 (-)
XLOC_004125 BX571675.2 non-coding downstream 1051426 23305755 ~ 23309318 (-)
XLOC_004123 CR555297.1 non-coding downstream 1201437 23159189 ~ 23159307 (-)
XLOC_004117 NA non-coding downstream 2266347 22089435 ~ 22094397 (-)
XLOC_004142 CR628365.2 non-coding upstream 539452 24967771 ~ 24967887 (-)
XLOC_004144 dre-mir-499 non-coding upstream 776834 25205153 ~ 25205243 (-)
XLOC_004147 NA non-coding upstream 939793 25368112 ~ 25408896 (-)

Expression


Co-expression Network