XLOC_004132 (chia.3)


Basic Information

Item Value
gene id XLOC_004132
gene name chia.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24013769 ~ 24016813 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007891
GTTTTAATATTCATTCTCACATTTTTCTTGAGGTACCCCAGGTATGTAACCAACGCAGaatttctattaaaaaatctACTTAACTTGTTGTAATTAAGGaaactcattttttttaacagaaaattggCATTAGAATGGGGAGACTTACACTTATAGCAGGTTTGAGCTTGGTGCTCTGCCATGTCGCCTTTTCCATGGAAATGGCCTGCTACTTCACCAACTGGTCCCAATATAGACCTGGAATTGGAAAATATACTCCTGCAAATGTCGACCCTTACCTTTGCACACACCTTATCTATGCTTTTTCAATCATCAACCAAAGGAATGAGCTTGTCACATATGAGTGGAACGATGAAACTCTATACAAGGCCTTCAATGAACTCAAGAACAAAAATCCCACTCTTAAGACCCTTTTGGCTGTTGGAGGATGGAATTTTGGTTCGGCACAGTTCTCCATCATGGTGTCCAATCCTGCAAACCGTAAAACATTTATTCAGTCTACCATCAAATTCCTGAGAACTCATGGATTTGATGGACTGGATCTGGACTGGGAATATCCCGGAGCAAGAGGAAGTCCACCTGAAGACAAACAAAGATTCACTCTGCTGTGCAAGgaACTTGTTGCAGCCTATGAGGCTGAGAGTAAAGCCACTGGCAATCCTCAGCTTATGCTGACCGCTGCTGTATCAGCTGGCAAAGGCACTATTGATGATGGATATGAGATTGCAGAGATTGCCAAGTACTTGAACTTCATCAACGTCATGACTTACGACTTCCATGGCACTTGGGAGCGATTCACAGGACACAACAGCCCTCTGTACCAAGGCTCAAAGGATGAGGGAGACCTGATCTACTTCAACACCGACTATGCTATGCGCTACTGGAGGGACAATGGAACCCCTGTGGAGAAACTCAGAATGGGCTTTGCAGCATACGGTCGCACTTTCCGTCTGACATCTTCAGATACCAGCGTTGGAGCTCCAGCTAGTGGACCTGCTTCAGCTGGAACCTACACTCGCGAGGCTGGATTCTGGTCTTACTATGAGATCTGTGGATTCCTGGAGGGAACAACAATTCAGTGGATTGATGACCAGAAGGTGCCCTATGCCACAAAGAACAGCGAGTGGGTTGGATTTGACACCAAGGAGAGTTATGAAACGAAGGTCCGTTATCTGAAAGACAAGAATTTTGGTGGAGCTTTCGTTTGGGCACTTGATCTGGATGACTTTGCTGGACAGTTCTGTAGTCAGGGGAACCATCCTCTCATGGCCCATCTTCGCAATCTTCTGGATATTGAATTGCCTCCAATGCCTTCAACTACCACTCCTAAACCTGGCCAAAGCACCACAAGGCCGACCACAACCACAACTACCACCACTCATGCTCCAGGACCAGGATTCTGTAATGGGAAGCCAGATGGACTCTATGCTCACCCTAATGACCCCAACAAATATTACAGCTGTGCTGGAGGTCATACCTTCGTGGAAAAATGTGCTGTAGGCACCGTGTTTGATGACAGCTGCAAGTGCTGTGTTTGGCCCAAACCTTAGTGATCATGACTCAAGAAACTTCagaaaaacatttgcaaatagtGAAACAAGACACTGCAAATTTCCTTAAGCCAACAAATGACAGCAAACCGTTTCATATATAAGAACATTAGTGTAACCTacatttatttactaaatttGTATTATGTCTTTATTACATCTTGGTGACGTTTATACTGTAAGTGCAAGTACCTCTTTTTAAATGACTGACAAAAAGTTTGTTTCTTGTTCGTTTTCTCCTTGCTTGTGAAATTAATAAACTGACATCATGGAGAGGGGAGAAATCTGtggaaaatgtcttttttatGCAAGTTCATTGCTCTACAATCccaactcaaaataaaaaaaaaacaaaacttaaatacaaatgga
>TCONS_00007892
CTCACATTTTTCTTGAGGTACCCCAGaaaattggCATTAGAATGGGGAGACTTACACTTATAGCAGGTTTGAGCTTGGTGCTCTGCCATGTCGCCTTTTCCATGGAAATGGCCTGCTACTTCACCAACTGGTCCCAATATAGACCTGGAATTGGAAAATATACTCCTGCAAATGTCGACCCTTACCTTTGCACACACCTTATCTATGCTTTTTCAATCATCAACCAAAGGAATGAGCTTGTCACATATGAGTGGAACGATGAAACTCTATACAAGGCCTTCAATGAACTCAAGAACAAAAATCCCACTCTTAAGACCCTTTTGGCTGTTGGAGGATGGAATTTTGGTTCGGCACAGTTCTCCATCATGGTGTCCAATCCTGCAAACCGTAAAACATTTATTCAGTCTACCATCAAATTCCTGAGAACTCATGGATTTGATGGACTGGATCTGGACTGGGAATATCCCGGAGCAAGAGGAAGTCCACCTGAAGACAAACAAAGATTCACTCTGCTGTGCAAGgaACTTGTTGCAGCCTATGAGGCTGAGAGTAAAGCCACTGGCAATCCTCAGCTTATGCTGACCGCTGCTGTATCAGCTGGCAAAGGCACTATTGATGATGGATATGAGATTGCAGAGATTGCCAAGTACTTGAACTTCATCAACGTCATGACTTACGACTTCCATGGCACTTGGGAGCGATTCACAGGACACAACAGCCCTCTGTACCAAGGCTCAAAGGATGAGGGAGACCTGATCTACTTCAACACCGACTATGCTATGCGCTACTGGAGGGACAATGGAACCCCTGTGGAGAAACTCAGAATGGGCTTTGCAGCATACGGTCGCACTTTCCGTCTGACATCTTCAGATACCAGCGTTGGAGCTCCAGCTAGTGGACCTGCTTCAGCTGGAACCTACACTCGCGAGGCTGGATTCTGGTCTTACTATGAGATCTGTGGATTCCTGGAGGGAACAACAATTCAGTGGATTGATGACCAGAAGGTGCCCTATGCCACAAAGAACAGCGAGTGGGTTGGATTTGACACCAAGGAGAGTTATGAAACGAAGGTCCGTTATCTGAAAGACAAGAATTTTGGTGGAGCTTTCGTTTGGGCACTTGATCTGGATGACTTTGCTGGACAGTTCTGTAGTCAGGGGAACCATCCTCTCATGGCCCATCTTCGCAATCTTCTGGATATTGAATTGCCTCCAATGCCTTCAACTACCACTCCTAAACCTGGCCAAAGCACCACAAGGCCGACCACAACCACAACTACCACCACTCATGCTCCAGGACCAGGATTCTGTAATGGGAAGCCAGATGGACTCTATGCTCACCCTAATGACCCCAACAAATATTACAGCTGTGCTGGAGGTCATACCTTCGTGGAAAAATGTGCTGTAGGCACCGTGTTTGATGACAGCTGCAAGTGCTGTGTTTGGCCCAAACCTTAGTGATCATGACTCAAGAAACTTCagaaaaacatttgcaaatagtGAAACAAGACACTGCAAATTTCCTTAAGCCAACAAATGACAGCAAACCGTTTCATATATAAGAACATTAGTGTAACCTacatttatttactaaatttGTATTATGTCTTTATTACATCTTGGTGACGTTTATACTGTAAGTGCAAGTACCTCTTTTTAAATGACTGACAAAAAGTTTGTTTCTTGTTCGTTTTCTCCTTGCTTGTGAAATTAATAAACTGACATCATGGAGAGGGGA
>TCONS_00007893
TTCTCCATCATGGTGTCCAATCCTGCAAACCGTAAAACATTTATTCAGTCTACCATCAAATTCCTGAGAACTCATGGATTTGATGGACTGGATCTGGACTGGGAATATCCCGGAGCAAGAGGAAGTCCACCTGAAGACAAACAAAGATTCACTCTGCTGTGCAAGgaACTTGTTGCAGCCTATGAGGCTGAGAGTAAAGCCACTGGCAATCCTCAGCTTATGCTGACCGCTGCTGTATCAGCTGGCAAAGGCACTATTGATGATGGATATGAGATTGCAGAGATTGCCAAGTACTTGAACTTCATCAACGTCATGACTTACGACTTCCATGGCACTTGGGAGCGATTCACAGGACACAACAGCCCTCTGTACCAAGGCTCAAAGGATGAGGGAGACCTGATCTACTTCAACACCGACTATGCTATGCGCTACTGGAGGGACAATGGAACCCCTGTGGAGAAACTCAGAATGGGCTTTGCAGCATACGGTCGCACTTTCCGTCTGACATCTTCAGATACCAGCGTTGGAGCTCCAGCTAGTGGACCTGCTTCAGCTGGAACCTACACTCGCGAGGCTGGATTCTGGTCTTACTATGAGATCTGTGGATTCCTGGAGGGAACAACAATTCAGTGGATTGATGACCAGAAGGTGCCCTATGCCACAAAGAACAGCGAGTGGGTTGGATTTGACACCAAGGAGAGTTATGAAACGAAGGTCCGTTATCTGAAAGACAAGAATTTTGGTGGAGCTTTCGTTTGGGCACTTGATCTGGATGACTTTGCTGGACAGTTCTGTAGTCAGGGGAACCATCCTCTCATGGCCCATCTTCGCAATCTTCTGGATATTGAATTGCCTCCAATGCCTTCAACTACCACTCCTAAACCTGGCCAAAGCACCACAAGGCCGACCACAACCACAACTACCACCACTCATGCTCCAGGACCAGGATTCTGTAATGGGAAGCCAGATGGACTCTATGCTCACCCTAATGACCCCAACAAATATTACAGCTGTGCTGGAGGTCATACCTTCGTGGAAAAATGTGCTGTAGGCACCGTGTTTGATGACAGCTGCAAGTGCTGTGTTTGGCCCAAACCTTAG
>TCONS_00007894
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtttgtgtgtgtccatAACCAGCCTTTTCCATGGAAATGGCCTGCTACTTCACCAACTGGTCCCAATATAGACCTGGAATTGGAAAATATACTCCTGCAAATGTCGACCCTTACCTTTGCACACACCTTATCTATGCTTTTTCAATCATCAACCAAAGGAATGAGCTTGTCACATATGAGTGGAACGATGAAACTCTATACAAGGCCTTCAATGAACTCAAGAACAAAAATCCCACTCTTAAGACCCTTTTGGCTGTTGGAGGATGGAATTTTGGTTCGGCACAGTAAGTATTCTCTATAATCATGATACACGATTGTTGTATCTTTTTAAATGAGATACAAAAACATATAAGATTGTACCTTAAATTCATCTCAGGTTCTCCATCATGGTGTCCAATCCTGCAAACCGTAAAACATTTATTCAGTCTACCATCAAATTCCTGAGAACTCATGGATTTGATGGACTGGATCTGGACTGGGAATATCCCGGAGCAAGAGGAAGTCCACCTGAAGACAAACAAAGATTCACTCTGCTGTGCAAGgaACTTGTTGCAGCCTATGAGGCTGAGAGTAAAGCCACTGGCAATCCTCAGCTTATGCTGACCGCTGCTGTATCAGCTGGCAAAGGCACTATTGATGATGGATATGAGATTGCAGAGATTGCCAAGTACTTGAACTTCATCAACGTCATGACTTACGACTTCCATGGCACTTGGGAGCGATTCACAGGACACAACAGCCCTCTGTACCAAGGCTCAAAGGATGAGG
>TCONS_00007895
ACGCAGaatttctattaaaaaatctACTTAACTTGTTGTAATTAAGGaaactcattttttttaacagaaaattggCATTAGAATGGGGAGACTTACACTTATAGCAGGTTTGAGCTTGGTGCTCTGCCATGTCGCCTTTTCCATGGAAATGGCCTGCTACTTCACCAACTGGTCCCAATATAGACCTGGAATTGGAAAATATACTCCTGCAAATGTCGACCCTTACCTTTGCACACACCTTATCTATGCTTTTTCAATCATCAACCAAAGGAATGAGCTTGTCACATATGAGTGGAACGATGAAACTCTATACAAGGCCTTCAATGAACTCAAGAACAAAAATCCCACTCTTAAGACCCTTTTGGCTGTTGGAGGATGGAATTTTGGTTCGGCACAGTTCTCCATCATGGTGTCCAATCCTGCAAACCGTAAAACATTTATTCAGTCTACCATCAAATTCCTGAGAACTCATGGATTTGATGGACTGGATCTGGACTGGGAATATCCCGGAGCAAGAGGAAGTCCACCTGAAGACAAACAAAGATTCACTCTGCTGTGCAAGgaACTTGTTGCAGCCTATGAGGCTGAGAGTAAAGCCACTGGCAATCCTCAGCTTATGCTGACCGCTGCTGTATCAGCTGGCAAAGGCACTATTGATGATGGATATGAGATTGCAGAGATTGCCAAGTACTTGAACTTCATCAACGTCATGACTTACGACTTCCATGGCACTTGGGAGCGATTCACAGGACACA
>TCONS_00007896
ACATTTTTCTTGAGGTACCCCAGGTATGTAACCAACGCAGaatttctattaaaaaatctACTTAACTTGTTGTAATTAAGGaaactcattttttttaacagaaaattggCATTAGAATGGGGAGACTTACACTTATAGCAGGTAAGAGCGGATATACACTAAGTGAAATGTAAAATACACTAgagaattcttttttttaatatatttattatttacataaagtCATTTTGTTTCCTAGGTTTGAGCTTGGTGCTCTGCCATGTCGCCTTTTCCATGGAAATGGCCTGCTACTTCACCAACTGGTCCCAATATAGACCTGGAATTGGAAAATATACTCCTGCAAATGTCGACCCTTACCTTTGCACACACCTTATCTATGCTTTTTCAATCATCAACCAAAGGAATGAGCTTGTCACATATGAGTGGAACGATGAAACTCTATACAAGGCCTTCAATGAACTCAAGAACAAGTATGTATTATTTTCAGATTCTATAAAAATAGTATTCAGCTATTGTCTCTTACCAaactaata

Function

symbol description
chia.3 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region. Is expressed in gut and intestinal bulb. Human ortholog(s) of this gene implicated in asthma and schizophrenia. Orthologous to several human genes including CHIT1 (chitinase 1) and CHIA (chitinase acidic).

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2891 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region. Is expressed in gut and intestinal bulb. Human ortholog(s) of this gene implicated in asthma and schizophrenia. Orthologous to several human genes including CHIT1 (chitinase 1) and CHIA (chitinase acidic).

Ensembl:

ensembl_id ENSDARG00000009612

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007891 False 1922 mRNA 0.43 11 24013769 24016813
TCONS_00007892 False 1737 mRNA 0.45 12 24013861 24016798
TCONS_00007893 False 1101 mRNA 0.49 7 24014141 24015845
TCONS_00007894 False 801 lncRNA 0.43 4 24015236 24016385
TCONS_00007895 False 755 mRNA 0.43 7 24015269 24016761
TCONS_00007896 True 533 lncRNA 0.34 2 24016063 24016795

Neighbor

gene id symbol gene type direction distance location
XLOC_004131 CR354444.1 coding downstream 112408 23900000 ~ 23901361 (-)
XLOC_004129 pik3c2b coding downstream 316552 23593837 ~ 23697217 (-)
XLOC_004130 LO016980.1 coding downstream 358291 23655350 ~ 23655478 (-)
XLOC_004128 plekha6 coding downstream 488158 23342996 ~ 23525611 (-)
XLOC_004127 golt1a coding downstream 681177 23327784 ~ 23332592 (-)
XLOC_004133 trib3 coding upstream 41717 24058530 ~ 24063196 (-)
XLOC_004134 sox12 coding upstream 170797 24187610 ~ 24191928 (-)
XLOC_004135 si:ch211-15p9.2 coding upstream 328884 24345697 ~ 24347644 (-)
XLOC_004136 dvl1b coding upstream 343931 24360744 ~ 24428319 (-)
XLOC_004137 mxra8a coding upstream 413110 24429923 ~ 24458786 (-)
XLOC_004063 CR854846.1 misc downstream 7886091 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 11322078 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 11392002 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 11422473 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 11500507 12512966 ~ 12513262 (-)
XLOC_004125 BX571675.2 non-coding downstream 704451 23305755 ~ 23309318 (-)
XLOC_004123 CR555297.1 non-coding downstream 854462 23159189 ~ 23159307 (-)
XLOC_004117 NA non-coding downstream 1919372 22089435 ~ 22094397 (-)
XLOC_004140 NA non-coding upstream 692971 24709784 ~ 24714293 (-)
XLOC_004141 CR628365.1 non-coding upstream 802452 24819265 ~ 24820001 (-)
XLOC_004142 CR628365.2 non-coding upstream 950958 24967771 ~ 24967887 (-)
XLOC_004144 dre-mir-499 non-coding upstream 1188340 25205153 ~ 25205243 (-)
XLOC_004147 NA non-coding upstream 1351299 25368112 ~ 25408896 (-)

Expression


Co-expression Network