RNA id: TCONS_00007894


Basic Information

Item Value
RNA id TCONS_00007894
length 801
lncRNA type retained_intron
GC content 0.43
exon number 4
gene id XLOC_004132
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24013769 ~ 24016813 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtttgtgtgtgtccatAACCAGCCTTTTCCATGGAAATGGCCTGCTACTTCACCAACTGGTCCCAATATAGACCTGGAATTGGAAAATATACTCCTGCAAATGTCGACCCTTACCTTTGCACACACCTTATCTATGCTTTTTCAATCATCAACCAAAGGAATGAGCTTGTCACATATGAGTGGAACGATGAAACTCTATACAAGGCCTTCAATGAACTCAAGAACAAAAATCCCACTCTTAAGACCCTTTTGGCTGTTGGAGGATGGAATTTTGGTTCGGCACAGTAAGTATTCTCTATAATCATGATACACGATTGTTGTATCTTTTTAAATGAGATACAAAAACATATAAGATTGTACCTTAAATTCATCTCAGGTTCTCCATCATGGTGTCCAATCCTGCAAACCGTAAAACATTTATTCAGTCTACCATCAAATTCCTGAGAACTCATGGATTTGATGGACTGGATCTGGACTGGGAATATCCCGGAGCAAGAGGAAGTCCACCTGAAGACAAACAAAGATTCACTCTGCTGTGCAAGgaACTTGTTGCAGCCTATGAGGCTGAGAGTAAAGCCACTGGCAATCCTCAGCTTATGCTGACCGCTGCTGTATCAGCTGGCAAAGGCACTATTGATGATGGATATGAGATTGCAGAGATTGCCAAGTACTTGAACTTCATCAACGTCATGACTTACGACTTCCATGGCACTTGGGAGCGATTCACAGGACACAACAGCCCTCTGTACCAAGGCTCAAAGGATGAGG

Function

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2891 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region. Is expressed in gut and intestinal bulb. Human ortholog(s) of this gene implicated in asthma and schizophrenia. Orthologous to several human genes including CHIT1 (chitinase 1) and CHIA (chitinase acidic).

Ensembl:

ensembl_id ENSDART00000154337

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007889 lncRNA downstream 113875 23900000 ~ 23901361 (-) False XLOC_004131
TCONS_00007890 lncRNA downstream 113891 23900409 ~ 23901345 (-) True XLOC_004131
TCONS_00008794 lncRNA downstream 489625 23498265 ~ 23525611 (-) True XLOC_004128
TCONS_00008793 lncRNA downstream 513473 23498265 ~ 23501763 (-) False XLOC_004128
TCONS_00007876 lncRNA downstream 705918 23305755 ~ 23309318 (-) False XLOC_004125
TCONS_00008469 lncRNA upstream 693399 24709784 ~ 24712223 (-) False XLOC_004140
TCONS_00008470 lncRNA upstream 693399 24709784 ~ 24712551 (-) False XLOC_004140
TCONS_00008795 lncRNA upstream 694734 24711119 ~ 24714275 (-) False XLOC_004140
TCONS_00008471 lncRNA upstream 695419 24711804 ~ 24712922 (-) False XLOC_004140
TCONS_00008472 lncRNA upstream 696584 24712969 ~ 24714293 (-) True XLOC_004140
TCONS_00007887 mRNA downstream 318019 23593837 ~ 23697217 (-) True XLOC_004129
TCONS_00007886 mRNA downstream 328078 23593837 ~ 23687158 (-) False XLOC_004129
TCONS_00007883 mRNA downstream 513769 23347558 ~ 23501467 (-) False XLOC_004128
TCONS_00007897 mRNA upstream 42145 24058530 ~ 24063196 (-) True XLOC_004133
TCONS_00007898 mRNA upstream 171225 24187610 ~ 24191928 (-) True XLOC_004134
TCONS_00007899 mRNA upstream 329312 24345697 ~ 24347644 (-) True XLOC_004135
TCONS_00007900 mRNA upstream 344359 24360744 ~ 24428319 (-) False XLOC_004136
TCONS_00007901 mRNA upstream 344386 24360771 ~ 24428237 (-) True XLOC_004136
TCONS_00007888 other downstream 359758 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007873 other downstream 855929 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007863 other downstream 1415681 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 2262647 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 2430075 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007910 other upstream 509291 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007913 other upstream 951386 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 1188768 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007927 other upstream 1459714 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007928 other upstream 1512172 25528557 ~ 25532480 (-) False XLOC_004151

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU281423 True 1710 TUCP 0.36 3 CI01000058 1452997 ~ 1456447 (+)
mexican tetra (Astyanax mexicanus) TU281423 True 263 lncRNA 0.33 2 NC_035920.1 23059004 ~ 23059362 (+)