RNA id: TCONS_00007901


Basic Information

Item Value
RNA id TCONS_00007901
length 2124
RNA type mRNA
GC content 0.52
exon number 15
gene id XLOC_004136
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24360744 ~ 24428319 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGAGACTAAAATCATATACCACATAGACGAGGAGGAAACTCCCTATTTAGTCAAACTGTCAGTGGCTCCGGAGAAGGTAACTTTGGCGGATTTCAAAAATGTCCTCAGCAACCGACCGGTCAACAGCTATAAATTCTTCTTCAAATCTATGGACCAGGATTTCGGGGTTGTCAAAGAAGAAGTCTCGGACGACAACGCCAAACTGCCTTGTTTCAATGGGAGAGTGGTGTCATGGCTTGTACTGGCCGAGAGCTCTCACACAGATGGGATGTCAGTGTGCACTGACAGTCATACTGAACATCCACCACCACTGGAGAGGACAGGAGGCATTGGGGACTCCAGACCGCCCTCATTCCAtgcgAATGCAGTGAACAGCAGAGATGGACTGGACACAGAAACTGGAAGCGAGCCTGTTCTTCGTCATCGTCGAGAGAGGGAACGAGAAAGAACCAGACGGAGGAGAGATGATTCTGAGCGGGTGGTAAGGGACTCAGCCATGGGTTGTGACAGCGGCTCCATCATGAGCAGTGAGCTGGAGTCGAGCTCTTTCATTGACAGCGAAGATGAGGAGGACGCAAGCAGGCTGAGCAGTTCCACAGAGCAGAGTTCTTCTTTTCAGTTAATGAAGAGACATAAACGCAGACGCCGGCGACACAAAGTGGCTAAAATTGataggTCATCCTCCTTCAGCAGTATCACAGATTCAACTATGAGCCTCAACATCATCACAGTTACTCTAAATATGGAGAAATACAACTTTCTGGGCATCAGTATAGTGGGCCAAAGCAATGATAGAGGAGACGGTGGCATCTACATTGGATCAATTATGAAGGGAGGAGCAGTGGCAGCAGATGGGAGGATAGAGCCAGGAGACATGCTGCTGCAGGTAAATGATGTCAACTTTGAAAACATGAGTAATGATGATGCAGTCAGGATCCTCAGAGAGATCGTCTCCAAAAATGGTCCCATCAGTCTCACTGTTGCCAAATGCTGGGACCCTTCCCCTCGCAGTTACTTTACAATACCCAGAGCTGAACCAGTCCGGCCCATTGACCCAGCAGCATGGATTTCACACACTACTGCACTTACGGGATCTTACCCACAAAACGAGTTTGATGAACTCCCTCTTACAATGGGGAAGACAGACATGGCCACCATAGTAAAGGTGATGCAGTTGCCTGACTCAGGACTAGAAATAAGGGACAGAATGTGGCTGAAGATCACTATAGCTAATGCAGTTATAGGAGGTGATGTCGTAGACTGGCTTTACTCAAGGGTGGAAGGATTCAAAGACCGCCGGGATGCCAGAAAATACGCCAGCAGCTTGCTGAAACACGGCTATCTCAGACACACTGTCAACAAGATCACATTCTCTGAACAGTGTTACTACACGTTTGGAGATCTCTGCCAAAACATGGCTACGTTAAACTTGAATGAGGGATCGAGTGGTGCTGGTTCAGAGCAGGACACTTtggctcctcttcctcctccgtCCACTAACCCGTGGCCCATGGGTGGCCAGCCATTCCCTTACCCACCCTTCACAGCGCCCCCTGCTTTCCCTCCAGGATATTCAGACCCCTGCCACAGTTTCCACAGTGGCAGCGCTGGAAGTCATCACAGTGAGGGAAGTCGCAGCAGTAGTTCCAACCCTAGCATTGGGAGAATCCAGCGGGCCGTACAGAGGGAAAAGGAGCGCAAATCAACAGGCAGCGAATCAGATTCAGGCAAGCGAGCAGGAGGGAGGAGGGTTGAGCGTTCAGCCAGCCAACTCAGCCACCGCAGCCACGCCCTGTCATCCCGTAGCCACACCCACTCACGAGTCCCCTCACAGCACAGCCGTACTTCCTTCTCCTACAGCCACGCCCCTTTTACCAAATATGGCCACACGTCCTGTGCACTCAGCGAACGGAGCCACGCCTCTTCTTATGGGCCCCCAGGTCTGCCTCCTCCATACAGCCTGGCTAGATTGACTCCTAAAGGGGCCGTCTGCAGTGGGCCCCCGGGGGCCCCTCCAGTGAGGGAAATGGGGGCCATACCACCTGAACTCACCGCCAGTCGACAGTCCTTCCAGCATGCAATGGGCAACCCTTGTGAGTTTTTTGTGGATATTATGTAA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0090179 planar cell polarity pathway involved in neural tube closure biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0005109 frizzled binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-1 Predicted to enable frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway and planar cell polarity pathway involved in neural tube closure. Predicted to act upstream of or within Wnt signaling pathway and intracellular signal transduction. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in DiGeorge syndrome and autosomal dominant Robinow syndrome 2. Orthologous to human DVL1 (dishevelled segment polarity protein 1).

Ensembl:

ensembl_id ENSDART00000189107

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007896 lncRNA downstream 343976 24016063 ~ 24016795 (-) True XLOC_004132
TCONS_00007894 lncRNA downstream 344386 24015236 ~ 24016385 (-) False XLOC_004132
TCONS_00007889 lncRNA downstream 459410 23900000 ~ 23901361 (-) False XLOC_004131
TCONS_00007890 lncRNA downstream 459426 23900409 ~ 23901345 (-) True XLOC_004131
TCONS_00008794 lncRNA downstream 835160 23498265 ~ 23525611 (-) True XLOC_004128
TCONS_00008469 lncRNA upstream 281547 24709784 ~ 24712223 (-) False XLOC_004140
TCONS_00008470 lncRNA upstream 281547 24709784 ~ 24712551 (-) False XLOC_004140
TCONS_00008795 lncRNA upstream 282882 24711119 ~ 24714275 (-) False XLOC_004140
TCONS_00008471 lncRNA upstream 283567 24711804 ~ 24712922 (-) False XLOC_004140
TCONS_00008472 lncRNA upstream 284732 24712969 ~ 24714293 (-) True XLOC_004140
TCONS_00007899 mRNA downstream 13127 24345697 ~ 24347644 (-) True XLOC_004135
TCONS_00007898 mRNA downstream 168843 24187610 ~ 24191928 (-) True XLOC_004134
TCONS_00007897 mRNA downstream 297575 24058530 ~ 24063196 (-) True XLOC_004133
TCONS_00007895 mRNA downstream 344010 24015269 ~ 24016761 (-) False XLOC_004132
TCONS_00007893 mRNA downstream 344926 24014141 ~ 24015845 (-) False XLOC_004132
TCONS_00007902 mRNA upstream 1686 24429923 ~ 24458786 (-) True XLOC_004137
TCONS_00007903 mRNA upstream 36119 24464356 ~ 24511335 (-) False XLOC_004138
TCONS_00007904 mRNA upstream 36119 24464356 ~ 24523161 (-) False XLOC_004138
TCONS_00007905 mRNA upstream 36119 24464356 ~ 24526503 (-) False XLOC_004138
TCONS_00007906 mRNA upstream 36119 24464356 ~ 24532988 (-) False XLOC_004138
TCONS_00007888 other downstream 705293 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007873 other downstream 1201464 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007863 other downstream 1761216 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 2608182 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 2775610 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007910 other upstream 97439 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007913 other upstream 539534 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 776916 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007927 other upstream 1047862 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007928 other upstream 1100320 25528557 ~ 25532480 (-) False XLOC_004151

Expression Profile

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