RNA id: TCONS_00007893


Basic Information

Item Value
RNA id TCONS_00007893
length 1101
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_004132
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24013769 ~ 24016813 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTCCATCATGGTGTCCAATCCTGCAAACCGTAAAACATTTATTCAGTCTACCATCAAATTCCTGAGAACTCATGGATTTGATGGACTGGATCTGGACTGGGAATATCCCGGAGCAAGAGGAAGTCCACCTGAAGACAAACAAAGATTCACTCTGCTGTGCAAGgaACTTGTTGCAGCCTATGAGGCTGAGAGTAAAGCCACTGGCAATCCTCAGCTTATGCTGACCGCTGCTGTATCAGCTGGCAAAGGCACTATTGATGATGGATATGAGATTGCAGAGATTGCCAAGTACTTGAACTTCATCAACGTCATGACTTACGACTTCCATGGCACTTGGGAGCGATTCACAGGACACAACAGCCCTCTGTACCAAGGCTCAAAGGATGAGGGAGACCTGATCTACTTCAACACCGACTATGCTATGCGCTACTGGAGGGACAATGGAACCCCTGTGGAGAAACTCAGAATGGGCTTTGCAGCATACGGTCGCACTTTCCGTCTGACATCTTCAGATACCAGCGTTGGAGCTCCAGCTAGTGGACCTGCTTCAGCTGGAACCTACACTCGCGAGGCTGGATTCTGGTCTTACTATGAGATCTGTGGATTCCTGGAGGGAACAACAATTCAGTGGATTGATGACCAGAAGGTGCCCTATGCCACAAAGAACAGCGAGTGGGTTGGATTTGACACCAAGGAGAGTTATGAAACGAAGGTCCGTTATCTGAAAGACAAGAATTTTGGTGGAGCTTTCGTTTGGGCACTTGATCTGGATGACTTTGCTGGACAGTTCTGTAGTCAGGGGAACCATCCTCTCATGGCCCATCTTCGCAATCTTCTGGATATTGAATTGCCTCCAATGCCTTCAACTACCACTCCTAAACCTGGCCAAAGCACCACAAGGCCGACCACAACCACAACTACCACCACTCATGCTCCAGGACCAGGATTCTGTAATGGGAAGCCAGATGGACTCTATGCTCACCCTAATGACCCCAACAAATATTACAGCTGTGCTGGAGGTCATACCTTCGTGGAAAAATGTGCTGTAGGCACCGTGTTTGATGACAGCTGCAAGTGCTGTGTTTGGCCCAAACCTTAG

Function

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2891 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region. Is expressed in gut and intestinal bulb. Human ortholog(s) of this gene implicated in asthma and schizophrenia. Orthologous to several human genes including CHIT1 (chitinase 1) and CHIA (chitinase acidic).

Ensembl:

ensembl_id ENSDART00000191783

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007889 lncRNA downstream 112780 23900000 ~ 23901361 (-) False XLOC_004131
TCONS_00007890 lncRNA downstream 112796 23900409 ~ 23901345 (-) True XLOC_004131
TCONS_00008794 lncRNA downstream 488530 23498265 ~ 23525611 (-) True XLOC_004128
TCONS_00008793 lncRNA downstream 512378 23498265 ~ 23501763 (-) False XLOC_004128
TCONS_00007876 lncRNA downstream 704823 23305755 ~ 23309318 (-) False XLOC_004125
TCONS_00007896 lncRNA upstream 218 24016063 ~ 24016795 (-) True XLOC_004132
TCONS_00008469 lncRNA upstream 693939 24709784 ~ 24712223 (-) False XLOC_004140
TCONS_00008470 lncRNA upstream 693939 24709784 ~ 24712551 (-) False XLOC_004140
TCONS_00008795 lncRNA upstream 695274 24711119 ~ 24714275 (-) False XLOC_004140
TCONS_00008471 lncRNA upstream 695959 24711804 ~ 24712922 (-) False XLOC_004140
TCONS_00007887 mRNA downstream 316924 23593837 ~ 23697217 (-) True XLOC_004129
TCONS_00007886 mRNA downstream 326983 23593837 ~ 23687158 (-) False XLOC_004129
TCONS_00007883 mRNA downstream 512674 23347558 ~ 23501467 (-) False XLOC_004128
TCONS_00007897 mRNA upstream 42685 24058530 ~ 24063196 (-) True XLOC_004133
TCONS_00007898 mRNA upstream 171765 24187610 ~ 24191928 (-) True XLOC_004134
TCONS_00007899 mRNA upstream 329852 24345697 ~ 24347644 (-) True XLOC_004135
TCONS_00007900 mRNA upstream 344899 24360744 ~ 24428319 (-) False XLOC_004136
TCONS_00007901 mRNA upstream 344926 24360771 ~ 24428237 (-) True XLOC_004136
TCONS_00007888 other downstream 358663 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007873 other downstream 854834 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007863 other downstream 1414586 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 2261552 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 2428980 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007910 other upstream 509831 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007913 other upstream 951926 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 1189308 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007927 other upstream 1460254 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007928 other upstream 1512712 25528557 ~ 25532480 (-) False XLOC_004151

Expression Profile

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