RNA id: TCONS_00008793


Basic Information

Item Value
RNA id TCONS_00008793
length 1072
lncRNA type sense_over
GC content 0.39
exon number 2
gene id XLOC_004128
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 23342996 ~ 23525611 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAAAAGAGCTGAAAGCAAATCATCTTGTTTTCTTCACCTCCCTTGATTATTCACAGATTAGACGAGACATGAAACGTACAGGACATAAACCGCACAGTATagctttgatgtttttttttgtaggagATTAAACGATTGAGATCTTGATGACTTGGCATACTATGCTGATAGCGAACGGTCATCTGAAGCTGTAGACGCAGTGATTATTTATTACTTTCAGAAGTTTAGCATCCAGTTTCTGAATATTCTGAGTCATCACACTGACGATTGCTTTCAAACACTAACACAAGCTTCATGGATGTAAGTCCATCAATGGGTGGGGCCAAGAGTATTGGGAGGGGCTGTCATTATAGACCAGCAGCCAATAGCAGCCTCTGAAGCATAATTGACTTGAATAGGATCTCCAACCCTTCCTCCACCTCCACACAAAGCACCATGCTGTGATTGCCTCCTTTTGTTAAGCTCTCTTTTCTCTCGCCACGTGCCAAGTGTTTTCGTCACAGCAGATGTCTGACACAATCTGCTCTAATCTCTGACTGGCATGACAGTGACTCCAAACTTGATTTGTGGCAACATGCATTTGCTTAAAcaggatagttcagccaaaaatggcatttactcaccatttactcaagtCATTGTACACCTATACCTATTTATTCATGCTGCTTTGTTAGTTACTTTCATTACACACTGGACTATTTAATACATATACGTTTTTATAGATTTCCAAAAGTTTTCGCTCATAAAGGGGGgaatacatccatgtgtacaaacaTTTGTTGAATGCGATCTGTTGTTTAGATCAGattcaaacaccaccacacttatacaaaatccaggagaatataaataacgTACCCTGCCTGTAATCACTGTAATGAAATCTCcctcttgttttgcaataatcaaAGTCTTCTGTACTTTGATGGAGTAAACAACTGTAACGTTAACGTCTATATGTGAAGCAGTGGTGAATGTTTGTTGATATTAAATTCATcgatcaaacaaaaaataaaggcaACCTTTGCGACAAAACTAGACAGTTATTATTGTAGAGCACTTTCCCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007876 lncRNA downstream 188947 23305755 ~ 23309318 (-) False XLOC_004125
TCONS_00007875 lncRNA downstream 188947 23305755 ~ 23309318 (-) True XLOC_004125
TCONS_00007872 lncRNA downstream 417305 22993020 ~ 23080960 (-) True XLOC_004122
TCONS_00008468 lncRNA downstream 586152 22909764 ~ 22912113 (-) True XLOC_004121
TCONS_00008467 lncRNA downstream 592365 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00007889 lncRNA upstream 398237 23900000 ~ 23901361 (-) False XLOC_004131
TCONS_00007890 lncRNA upstream 398646 23900409 ~ 23901345 (-) True XLOC_004131
TCONS_00007894 lncRNA upstream 513473 24015236 ~ 24016385 (-) False XLOC_004132
TCONS_00007896 lncRNA upstream 514300 24016063 ~ 24016795 (-) True XLOC_004132
TCONS_00008469 lncRNA upstream 1208021 24709784 ~ 24712223 (-) False XLOC_004140
TCONS_00007885 mRNA downstream 18399 23403812 ~ 23479866 (-) False XLOC_004128
TCONS_00007882 mRNA downstream 38486 23347558 ~ 23459779 (-) False XLOC_004128
TCONS_00007881 mRNA downstream 38486 23347558 ~ 23459779 (-) False XLOC_004128
TCONS_00007884 mRNA downstream 38486 23348306 ~ 23459779 (-) False XLOC_004128
TCONS_00007880 mRNA downstream 39473 23342996 ~ 23458792 (-) False XLOC_004128
TCONS_00007886 mRNA upstream 92074 23593837 ~ 23687158 (-) False XLOC_004129
TCONS_00007887 mRNA upstream 92074 23593837 ~ 23697217 (-) True XLOC_004129
TCONS_00007891 mRNA upstream 512006 24013769 ~ 24016813 (-) False XLOC_004132
TCONS_00007892 mRNA upstream 512098 24013861 ~ 24016798 (-) False XLOC_004132
TCONS_00007893 mRNA upstream 512378 24014141 ~ 24015845 (-) False XLOC_004132
TCONS_00007873 other downstream 338958 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007863 other downstream 898710 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 1745676 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 1913104 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007815 other downstream 4081950 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007888 other upstream 153587 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007910 other upstream 1023913 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007913 other upstream 1466008 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 1703390 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007927 other upstream 1974336 25476099 ~ 25476185 (-) True XLOC_004150

Expression Profile

//