RNA id: TCONS_00007875


Basic Information

Item Value
RNA id TCONS_00007875
length 1944
lncRNA type lincRNA
GC content 0.34
exon number 6
gene id XLOC_004125
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 23305755 ~ 23309318 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATTTCAACATTTGAAGTGTACATTATCTTTGAATGAGCAGGATACAGTGTTTTatctttaatgttatttaaaactgGTGATGCTCAACCACAACTTTCCACTGCGCTGATGCTAATCACTGAGCACTTCCGTGCTTGTTCTTTTAAGAGAGGGCTTGATGACTAACTTGATTATACTATTTAAGATCATTAAAAAGAGGAATTAGGAAGCTAATGAAATAATGTCTGATTTCAACATGTGGAATATACAATCTGTATTCTTTATCACACTCTGCATGTTTCTTTTCAATGTGGCAGATAACAAACTTGTAAATGGGAATTCAACCACTGGAGACATAAcatgTAATGTTCTTCATCCATTGGTGTACGCTATCATCTGCTTCCTCGCTGCTGTCATTCTCATTCTCCTAATAATTCTGTATAAAATCATCTCCATGCAAAATCGCGTCAAAAAAGACAATATCCACATGGCCAGCGACACAGGAGAATCGACATCTTTACATAATGCTTTGTGTACAAGTCTTGCTCCAACCTCATGCGACGACgGAGCAGATAATTCATCCTCTACTAGTTCAGGGACTCCTGAAGGCTCGaTTTCCAGTAGATCTCAGCGGTACGTGAGTATTCCAGAGTGCTCGAAAACATCCGACTACATCAATGTTTCAGAAGGGGTTTCCTCTGGACGAGTGGACTTTAAGAATAAAACAACACGCATAGACTATGTGAACAATAAAGAGTCCCAAAGGAAGAAGGTCAGTGGAAAAGGTCAAGCGAGATGTGCTGACGCTACAAGCGTTAGCAGCGACGCGAGTGACGAGTCTGCTGTCAATTACTCCAAGGTTGTTTTTACCAAAGCGAAGAAGTAACATGTCATTGGTAGCTTTTGTAAAAATGGATCATTTAGcttgaaatgaaaattctgtcatcatttattcacatgTATGTTATTATAAAAGCTGTATGGCTTgcttttctttgtggagtttttgGGGGTTTTGCTATAAATTAAATGGTCACTGCAGTGTTCATTTAGTATCACTGAGTAACGTTTGTAGctctttaatatttagattttgtttctatttttaacTTTTGAAGTTTGGTTGTAATTcgttatatagtttttaaaaagtatttatgttttatttatactctAGTTTGACATACATACACACTGGGTATTCATCTTTTGTAGGGACTTCCCATAGACGTAATGATTTTTAAACTGTGTATTCTGTACTTCGTATTCCCCAAGCCTAACCCTAAACACAAACTTCACAGAAAATAttctgcagttttacattttcaaaatactacaTTATATCAAGATTTATGAGTTGTTTCCCTcatgggaaaaatattaaataaataaacagtcacCTAAGTTCAAAAATGCTATTGCTACTTGGTGCCCACATGATAAATACCAGGATCACACACAGTTGTTCATCTGTCATATaaactaaagaaaatgaatgttttttttttttttagaaaagggctgaaaaaaatgtgtttaattaaaataataacaattattgtacttttattgtcttattaatCATTAACAGCTCTCTCTTACAGAGACATAGGCCTGTATTTTTAATATAGCTATCATTTTCATataatattcactctgaaaaaAGTACTGAGCTCTCAACTACTCAAGATGTATTATGCATATGCACAATAATCATTTAAGGAAAGGAATTGCATTTGGTTATGcttacactttaaaacccaacagtcaactttatcaaataaaatgacaggagttaacttaaaatatactgaaagtaattttctactcatttgaaaagagttttgaactcagtgttgaaagtaatgagttaattaaatacctcattaactcaacttaaattgagtaagttcaCAGGACTCAtatggattagttttttttaactcaaacggtttgtgcaatc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194515

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007872 lncRNA downstream 224795 22993020 ~ 23080960 (-) True XLOC_004122
TCONS_00008468 lncRNA downstream 393642 22909764 ~ 22912113 (-) True XLOC_004121
TCONS_00008467 lncRNA downstream 399855 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00008792 lncRNA downstream 1211358 22089435 ~ 22094397 (-) True XLOC_004117
TCONS_00008791 lncRNA downstream 1399695 21893602 ~ 21906060 (-) True XLOC_004116
TCONS_00008793 lncRNA upstream 188947 23498265 ~ 23501763 (-) False XLOC_004128
TCONS_00008794 lncRNA upstream 188947 23498265 ~ 23525611 (-) True XLOC_004128
TCONS_00007889 lncRNA upstream 590682 23900000 ~ 23901361 (-) False XLOC_004131
TCONS_00007890 lncRNA upstream 591091 23900409 ~ 23901345 (-) True XLOC_004131
TCONS_00007894 lncRNA upstream 705918 24015236 ~ 24016385 (-) False XLOC_004132
TCONS_00007874 mRNA downstream 86388 23205889 ~ 23219367 (-) True XLOC_004124
TCONS_00007869 mRNA downstream 279806 22926943 ~ 23025949 (-) False XLOC_004122
TCONS_00007877 mRNA upstream 2134 23311452 ~ 23314242 (-) False XLOC_004126
TCONS_00007878 mRNA upstream 2858 23312176 ~ 23322182 (-) True XLOC_004126
TCONS_00007879 mRNA upstream 18466 23327784 ~ 23332592 (-) True XLOC_004127
TCONS_00007880 mRNA upstream 33678 23342996 ~ 23458792 (-) False XLOC_004128
TCONS_00007882 mRNA upstream 38240 23347558 ~ 23459779 (-) False XLOC_004128
TCONS_00007873 other downstream 146448 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007863 other downstream 706200 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 1553166 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 1720594 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007815 other downstream 3889440 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007888 other upstream 346032 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007910 other upstream 1216358 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007913 other upstream 1658453 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 1895835 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007927 other upstream 2166781 25476099 ~ 25476185 (-) True XLOC_004150

Expression Profile

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