RNA id: TCONS_00007878


Basic Information

Item Value
RNA id TCONS_00007878
length 659
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_004126
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 23311452 ~ 23322182 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAGCTCCATACCTGCAAGTGTAAAGAACTCTTCTCTTTCtgaaacacattaaaatgatgcTGCTTACTGTCATATTGATGTTGTCAGTGGCGAGGGTACACACAAACCCCTCTGGGCATTTTCAGTATTACTTAGAAGatgaaactccagaggaaacatCACTCCGGGTCCTCAGGGGAACAGACACTCGTCCCACAGATGGATCTCCTCCATCTAAACTCTCAGCGCTCTTCTCCATGGGTGCAGGTCCTCAGAAAAACACATGGTGGTGGTCTCCAGAAAGTCCTTACACCAAGAGGAGACAGAATGTAGCTTACTACAATCTCAACTCCTTCGGCCTCCGCTATGGCAAGAGAGAACAGGACATGCTCACACGATTGAAACAGAAAAGTCCTGTAAAGTGAAGGACCAATAATGTTCTTTGGTGTTTTATCATTTACGTAAAtacatgttttctgtttttatttctgttattttgttgggtgtaattagtttCATTTGGGTGTTTAGGTAGgggatatgtttttttttgtgtattatttttctgTTGGTCCTCTCTGAGGTATTTGCCTTCATGTTTTAGgtgttaaaaagaaagaaaaatacaagaaaaaagacaaataaacggACCTTACTCTAAGGGTTCGtaaaagtgta

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0019228 neuronal action potential biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:1903365 regulation of fear response biological_process
GO:0043005 neuron projection cellular_component
GO:0031773 kisspeptin receptor binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04929 GnRH secretion

ZFIN:

id description
ZDB-GENE-080128-1 Enables G protein-coupled receptor binding activity. Acts upstream of or within neuronal action potential and regulation of fear response. Predicted to be active in neuron projection. Is expressed in several structures, including brain; fat cell; liver; male organism; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 13 with or without anosmia. Orthologous to human KISS1 (KiSS-1 metastasis suppressor).

Ensembl:

ensembl_id ENSDART00000111289

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007876 lncRNA downstream 2858 23305755 ~ 23309318 (-) False XLOC_004125
TCONS_00007875 lncRNA downstream 2858 23305755 ~ 23309318 (-) True XLOC_004125
TCONS_00007872 lncRNA downstream 231216 22993020 ~ 23080960 (-) True XLOC_004122
TCONS_00008468 lncRNA downstream 400063 22909764 ~ 22912113 (-) True XLOC_004121
TCONS_00008467 lncRNA downstream 406276 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00008793 lncRNA upstream 176083 23498265 ~ 23501763 (-) False XLOC_004128
TCONS_00008794 lncRNA upstream 176083 23498265 ~ 23525611 (-) True XLOC_004128
TCONS_00007889 lncRNA upstream 577818 23900000 ~ 23901361 (-) False XLOC_004131
TCONS_00007890 lncRNA upstream 578227 23900409 ~ 23901345 (-) True XLOC_004131
TCONS_00007894 lncRNA upstream 693054 24015236 ~ 24016385 (-) False XLOC_004132
TCONS_00007874 mRNA downstream 92809 23205889 ~ 23219367 (-) True XLOC_004124
TCONS_00007869 mRNA downstream 286227 22926943 ~ 23025949 (-) False XLOC_004122
TCONS_00007879 mRNA upstream 5602 23327784 ~ 23332592 (-) True XLOC_004127
TCONS_00007880 mRNA upstream 20814 23342996 ~ 23458792 (-) False XLOC_004128
TCONS_00007882 mRNA upstream 25376 23347558 ~ 23459779 (-) False XLOC_004128
TCONS_00007881 mRNA upstream 25376 23347558 ~ 23459779 (-) False XLOC_004128
TCONS_00007883 mRNA upstream 25376 23347558 ~ 23501467 (-) False XLOC_004128
TCONS_00007873 other downstream 152869 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007863 other downstream 712621 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 1559587 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 1727015 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007815 other downstream 3895861 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007888 other upstream 333168 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007910 other upstream 1203494 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007913 other upstream 1645589 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 1882971 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007927 other upstream 2153917 25476099 ~ 25476185 (-) True XLOC_004150

Expression Profile

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