XLOC_004131 (CR354444.1)


Basic Information

Item Value
gene id XLOC_004131
gene name CR354444.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 23900000 ~ 23901361 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007889
CCGCCATTTGTGTTGTATCCGAGTTAACGTGAGCTGTTATATGGCTTTAGCGTCTTTGCAGAGTAAATACAGCGTTACGTTAGTGTTGTATTAAGGGCTGTAATAGTAAAATCACACGATCGAAAGGGTAAAAAATGATCACGATGACAGATATTTTAAATTTCCCGCTCGGAAGAAAGGATATTGACCGACTGTAGCGGTAACAACAGACGCATCGAATGTCCTAGCCTGCTGCATTGAGACGCAGAATATATCTTCATTTCTCCGTTTATGCTCTCAACATTTTCACAAAGGTAAGTACAACTGACCCAGACTGAGCACCATCTCTACATCTGGGCCACACAGAAACTACACAGACAGACACTGCACACTCTGCAAGAAAGACTAAGAGAAGAGAAAGAAAACCAACACTGCAGTCAGCTGAAGATGTGGACGAACAACATGCTGGGAAGGAGACATTTGAGGTTGAAATTAGTGAGAGACACTGATGAGGAGACACAACACTAAGGAAGTAGCTGAGACAAACTGAAAGTAAATTGTGTATGACAAGTGTAGAAGTAAACCGCCTGTTGGAGGAGAACTGACAGCTGCTGTGTGAACTTGAAGAATATAGGATGTCTGGTGGATTTTGTAGCAAGAATGATGCTAAAgtatcaaacagaaaaaaaaaacagaaaatcttAATAACAAGCACTGAGCCATAAACATGATACTCCCTTATGAGGTGAAGATGTCGCATTACAGCATAGGATTGT
>TCONS_00007890
ATCCGAGTTAACGTGAGCTGTTATATGGCTTTAGCGTCTTTGCAGAGATATTGACCGACTGTAGCGGTAACAACAGACGCATCGAATGTCCTAGCCTGCTGCATTGAGACGCAGAATATATCTTCATTTCTCCGTTTATGCTCTCAACATTTTCACAAAGCCAAGCTGCATATGAGATGGAGACTGACCCAGACTGAGCACCATCTCTACATCTGGGCCACACAGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100326

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007889 False 755 lncRNA 0.41 2 23900000 23901361
TCONS_00007890 True 226 lncRNA 0.46 3 23900409 23901345

Neighbor

gene id symbol gene type direction distance location
XLOC_004129 pik3c2b coding downstream 202783 23593837 ~ 23697217 (-)
XLOC_004130 LO016980.1 coding downstream 244522 23655350 ~ 23655478 (-)
XLOC_004128 plekha6 coding downstream 374389 23342996 ~ 23525611 (-)
XLOC_004127 golt1a coding downstream 567408 23327784 ~ 23332592 (-)
XLOC_004126 kiss1 coding downstream 577818 23311452 ~ 23322182 (-)
XLOC_004132 chia.3 coding upstream 112408 24013769 ~ 24016813 (-)
XLOC_004133 trib3 coding upstream 157169 24058530 ~ 24063196 (-)
XLOC_004134 sox12 coding upstream 286249 24187610 ~ 24191928 (-)
XLOC_004135 si:ch211-15p9.2 coding upstream 444336 24345697 ~ 24347644 (-)
XLOC_004136 dvl1b coding upstream 459383 24360744 ~ 24428319 (-)
XLOC_004063 CR854846.1 misc downstream 7772322 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 11208309 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 11278233 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 11308704 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 11386738 12512966 ~ 12513262 (-)
XLOC_004125 BX571675.2 non-coding downstream 590682 23305755 ~ 23309318 (-)
XLOC_004123 CR555297.1 non-coding downstream 740693 23159189 ~ 23159307 (-)
XLOC_004117 NA non-coding downstream 1805603 22089435 ~ 22094397 (-)
XLOC_004116 NA non-coding downstream 1993940 21893602 ~ 21906060 (-)
XLOC_004140 NA non-coding upstream 808423 24709784 ~ 24714293 (-)
XLOC_004141 CR628365.1 non-coding upstream 917904 24819265 ~ 24820001 (-)
XLOC_004142 CR628365.2 non-coding upstream 1066410 24967771 ~ 24967887 (-)
XLOC_004144 dre-mir-499 non-coding upstream 1303792 25205153 ~ 25205243 (-)
XLOC_004147 NA non-coding upstream 1466751 25368112 ~ 25408896 (-)

Expression


Co-expression Network