XLOC_004117


Basic Information

Item Value
gene id XLOC_004117
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 22089435 ~ 22094397 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008792
AGACAGTGTAATaagtatttttattgcattttataatGCCATTGTCAATAATTAGTACAGATTACATGCAACTAGACCTACTGTACagtttttttattgtctgcatggACAGACACAAGAAGATTCAGGTTACAAATACAcagatatatgtgttttttttttatacagcatGAAGAAAAAACGGCAGTGACTGGCATAAACATGGTCACCGGGGGGTTAGAACGACAAAGGTGGATGGCTAGttgcctttttttctttaattttctatACCATTTCAAAAGCCACCACCTTTTCTTCCCCCAAGTCTCATCTGAAAAAGCGAAACAAACAAACGGaagttaaaatgaaactaaagtACATAGAAGTCACTGCTgaaaaaatgtacacacattcgTAAAAAATACAATGAGAGGAGAGTCAAAGTGGTAGTTCCATTCGATTGGCCGAAGAAGTTAATACCATCAGGCAAAAAAAGCTCCCTTGAAGGAATCctttacttaaaaacaaacaaacaaacaggcaaCTCAAAGCTATTCATCACTGGCATTGTAGCTCTGCTTTAAAGACATAGTCATCTTCCTCAAGCGTTTGTTTGGTTACAGTTGTGGCAGACTTGAAGTAAAAACGTCAATCCACAATCCCTTTGGTGGTCGTTGAAGATGAACtgcattattattacattttttttttttttttggtttgctaCTGTGGAAAATCCACATCAAGTTCACAGCAGATGGCAAACTTAATGTTACAAGAGAAGCCAAAATATACTGTATGGAAGATGCTCTCCATTGGTAACCAAAGAGAGCCACTTATTCTGAAGCACGATTGCCTTATGAAAAACAGCTTTGAGTGCTCATCATGGTAAATAAAGGaatgatttgattttgttttaaagggAGTCTGTACATGTATTGGCACCTAAATGGaccaatattaaaataataacaataaaaaaacaaacacctttCTTATAAGCAAGAGAGGGCTACACATTTAGTTTCttcaatgtcttttttttctctttcaatgAAGTTTTGGTCCTGTCTTTTGAGAAAAGTCCTTCTGAGGTATCATTACACAATGAGTTCagctttttagtttagttttctctcttttttccttaaaaatgcataaatgcacTACAGAGACAAAAAGTATCAAAATAGACCTAGCTAAGATAAATATACAAACAGGTGTGTGTTACCTAAACCACTTATCTAACTcttaatcttttttgttttttttttcaattttgagataatacactaaaaaataaaataataaaaaaaatcatcatcgTCCCAGACGTTTTATGACAGAAAAAACTGGGaaaaacaaagtaacaaacataaaaatgatACCTGCAGCACATAATATGATAAATACATACACTTCAGCATAAGCAATACAGTATTCTGAGCTCAAAACTttacaatagcaaaaaaaaaaaaaaaaaaaaaaaacagtgcggaaaacataaaacaaatgaaaagtaAGCAAATAAATGAAACACAAAAAGGAGGGAATGCCCTTGACAGCTAAGCCGAGCGGTAATATACAATAATACATCATGAAGTAACGAAGGAGTCATGGCGATCATCACTGATGTGTTTCAGTGTACCTTAAAGCACAATTGTAGTCCGTTTCTATAATGcagcgagtttttttttttttttcagttccttCAAATCCTCAGTTCTTGAGAGCACAAGCTTGATGTTTCTCTTTGGATATTTTGGTTTCGTCTTGCGGTTAAAAATAAAGGCCGGGAGCATGAtgatctcagtgtgtgtgtgtgtgtgcatgtgtgtgtgcgtttttgtTCTCCACACTTTGCATTAATTGGGAAGCGGGGTCCGTGCGAGAGTGGCCTGCGTTAATGCATTCTGCCTATCATCATTTCTGACACCCAACTGACTGGCCCATTGAGTGTGTGCTAATGACCGGCCAGCTCGATGGCTCTCATTGGCCTGGCCTCTCATTATGCATGCGGAATTAGAACACACAATTAAGCCTCCGCACAGAGGACCTGTACATAGACACTATGCTAATAGATCGCTTAAAGTGGGGAATATGTGATTTGGAGTAGACCCTTTTAAATATGTTGACCACTTAATGCTTCATACTTAACAGGActcagcattatttttttttttcgtaggGGGTGGAGAGGTAGtcgtctttttttatttatttatattttgttgccgttgtttatttgtttccatTCATGCCAACGGAACACAGCGATATTTTGGTTTTTccgacaatgtgtgtgtgtgtgtggatgaatgAAAAACTAGAAGGGATTTACACCTTTTCATTGGCCTATATCTATTTTGTGAACTGTTTTCAAAAGGAGGTAGAgttatttttggttttatttcttTGAAGGTGTTTAACATACAGGTGACTATGTACGGTAGCGAAAAGAAGCGGTAAATGATTGgtttcaaatgaaaaaaagagTCCCTATCAGCCGTCCCTTATTAGTGTGGTAAATAATACTGTTCAACAGGCAGGATGAGCACAACAAGCAAGTGCTTGCCTGCTTTTATTTTTGGTATTCGTTGAACTGCGATTTATTGTGAAATACTGGTATTTGAAGTAAACCGTCATTGCTGCTGGCTTCTAGTGTCACAAAGTACATTACCTGCTATTCAAGTGCCTTTTGCATGCAGTCTTAAGACTGCGTTCTCAACACTGCAAATCGCCTGAGCACAAGATGGGGTAGAGAGAGCTTCCTTTCTCAGATCGTAGGGGACGGGGCTTCCTCTTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008792 True 2786 lncRNA 0.37 2 22089435 22094397

Neighbor

gene id symbol gene type direction distance location
XLOC_004116 NA coding downstream 183375 21893602 ~ 21906060 (-)
XLOC_004115 CT573222.1 coding downstream 336846 21752475 ~ 21752589 (-)
XLOC_004114 BX537291.1 coding downstream 477125 21582560 ~ 21612310 (-)
XLOC_004113 srgap2 coding downstream 503278 21405697 ~ 21586157 (-)
XLOC_004112 ikbke coding downstream 685077 21364551 ~ 21404358 (-)
XLOC_004118 tfeb coding upstream 193557 22287954 ~ 22361306 (-)
XLOC_004119 tmem183a coding upstream 269175 22363572 ~ 22372072 (-)
XLOC_004120 myog coding upstream 498538 22592935 ~ 22605981 (-)
XLOC_004121 mdm4 coding upstream 796600 22890997 ~ 22916641 (-)
XLOC_004122 atp2b4 coding upstream 826190 22920587 ~ 23080970 (-)
XLOC_004063 CR854846.1 misc downstream 5961757 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 9397744 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 9467668 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 9498139 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 9576173 12512966 ~ 12513262 (-)
XLOC_004108 NA non-coding downstream 969462 21117620 ~ 21119973 (-)
XLOC_004104 NA non-coding downstream 1136186 20952056 ~ 20953249 (-)
XLOC_004096 BX511159.1 non-coding downstream 2673120 19416178 ~ 19416315 (-)
XLOC_004123 CR555297.1 non-coding upstream 1064792 23159189 ~ 23159307 (-)
XLOC_004125 BX571675.2 non-coding upstream 1211358 23305755 ~ 23309318 (-)
XLOC_004130 LO016980.1 non-coding upstream 1560953 23655350 ~ 23655478 (-)
XLOC_004131 CR354444.1 non-coding upstream 1805603 23900000 ~ 23901361 (-)
XLOC_004140 NA non-coding upstream 2615387 24709784 ~ 24714293 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G47661 NA non-coding CM030125.1 CM030125.1 46803611 ~ 46838764 (-)