Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_004147 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 25368112 ~ 25408896 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0042692 | muscle cell differentiation | biological_process |
| GO:0048731 | system development | biological_process |
| GO:0048468 | cell development | biological_process |
| GO:0045445 | myoblast differentiation | biological_process |
| GO:0051146 | striated muscle cell differentiation | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0010927 | cellular component assembly involved in morphogenesis | biological_process |
| GO:0048513 | animal organ development | biological_process |
| GO:0055001 | muscle cell development | biological_process |
| GO:0055002 | striated muscle cell development | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0031032 | actomyosin structure organization | biological_process |
| GO:0009653 | anatomical structure morphogenesis | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0048869 | cellular developmental process | biological_process |
| GO:0048646 | anatomical structure formation involved in morphogenesis | biological_process |
| GO:0061061 | muscle structure development | biological_process |
| GO:0032501 | multicellular organismal process | biological_process |
| GO:0032502 | developmental process | biological_process |
| GO:0045661 | regulation of myoblast differentiation | biological_process |
| GO:0045663 | positive regulation of myoblast differentiation | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| id | description |
|---|---|
| ko03230 | Viral genome structure |
| ko04611 | Platelet activation |
| ko05164 | Influenza A |
| ko03200 | Viral proteins |
| id | description |
|---|---|
| ZDB-GENE-010605-4 | Enables sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including immune system; mesoderm; nervous system; pleuroperitoneal region; and vein. Human ortholog(s) of this gene implicated in Duane retraction syndrome and multicentric carpotarsal osteolysis syndrome. Orthologous to human MAFB (MAF bZIP transcription factor B). |
| ensembl_id | ENSDARG00000070542 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00008796 | False | 35572 | lncRNA | 0.35 | 1 | 25368112 | 25403683 |
| TCONS_00007921 | False | 6241 | lncRNA | 0.42 | 3 | 25368112 | 25408896 |
| TCONS_00007922 | True | 1612 | mRNA | 0.49 | 1 | 25382602 | 25384213 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_004146 | si:ch211-232b12.5 | coding | downstream | 43578 | 25313810 ~ 25324534 (-) |
| XLOC_004145 | snai1a | coding | downstream | 110517 | 25251495 ~ 25257595 (-) |
| XLOC_004143 | myh7ba | coding | downstream | 154423 | 25181886 ~ 25213689 (-) |
| XLOC_004144 | dre-mir-499 | coding | downstream | 162869 | 25205153 ~ 25205243 (-) |
| XLOC_004142 | CR628365.2 | coding | downstream | 400225 | 24967771 ~ 24967887 (-) |
| XLOC_004148 | gata1a | coding | upstream | 3018 | 25411914 ~ 25418856 (-) |
| XLOC_004149 | hcfc1a | coding | upstream | 27544 | 25436440 ~ 25461336 (-) |
| XLOC_004150 | NA | coding | upstream | 66409 | 25475305 ~ 25476980 (-) |
| XLOC_004151 | si:dkey-245f22.3 | coding | upstream | 119661 | 25528557 ~ 25539323 (-) |
| XLOC_004152 | CR933820.1 | coding | upstream | 260943 | 25669839 ~ 25669955 (-) |
| XLOC_004063 | CR854846.1 | misc | downstream | 9240434 | 16127382 ~ 16127678 (-) |
| XLOC_004019 | CR450764.8 | misc | downstream | 12676421 | 12691395 ~ 12691691 (-) |
| XLOC_004015 | CR450764.4 | misc | downstream | 12746345 | 12621518 ~ 12621767 (-) |
| XLOC_004013 | CABZ01022569.1 | misc | downstream | 12776816 | 12590999 ~ 12591296 (-) |
| XLOC_004008 | BX000700.19 | misc | downstream | 12854850 | 12512966 ~ 12513262 (-) |
| XLOC_004141 | CR628365.1 | non-coding | downstream | 548111 | 24819265 ~ 24820001 (-) |
| XLOC_004140 | NA | non-coding | downstream | 653819 | 24709784 ~ 24714293 (-) |
| XLOC_004131 | CR354444.1 | non-coding | downstream | 1466751 | 23900000 ~ 23901361 (-) |
| XLOC_004165 | CR847934.1 | non-coding | upstream | 1339396 | 26748292 ~ 26748429 (-) |
| XLOC_004167 | NA | non-coding | upstream | 2093309 | 27502205 ~ 27507973 (-) |
| XLOC_004169 | NA | non-coding | upstream | 2134682 | 27543578 ~ 27625465 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000306_03044394_03045362 | NA | coding | CI01000306 | null | 3043376 ~ 3046205 (-) |
