XLOC_004146 (si:ch211-232b12.5)


Basic Information

Item Value
gene id XLOC_004146
gene name si:ch211-232b12.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25313810 ~ 25324534 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007920
GTCTGCTCAGCCCGTCCTAGAACAGAGAGGGGTAGGATCAGGATTTTGGGTTTGGGTGACGCGTTTTAATCACGTGCCCTTATTTGAGAGCGCCTGGCGTACATTTCTTTCCCTTCTCGCCACTCCAGCAGCGCCCATGTCAGCCGGGCACATAATCAGTGTGCCATAAAGCAGTAGATGCTCCTTATCGCCGTGACCCGGAGGGTTCACGTTAGTTCACAGGGTTCATCTGAGGAGAGGTCTCGGCCCCTCCTGTTCCCCCGAGACCCGGAGCGGAGAGAAACCTAAATGTTATTCATTTCTGTATCAATAACGGATTTCCATTCGCAGTCAGCAGAGCCGACGAAAAGGTTCACAGGGAGCTGTTACTTCACTCCCTTTAACAATGGGAAGTCCTGATAGCTGAAGATTTCACCAATTGCTGGTTCATCACGGCTGGTGATGATACCTCAACTCCACACAATTCCAGTATTTGTTTCTGACTCTTCACTCATCTGCACAATCCTACAATATGGCCAGCAAGAGGAAATCCACCGTTCCCTGTATGATTCCATCTAAAAGCAAGCACATGCGGGAGGACATCATACTGGGATGCTTGCCTGAGCTCCTACCCACAATACCTGAAGACAGCATCCTCAGTATCTCTTCAAAAGATGAGGATGCACAACGATTCCATGATCTCTCAAAAGCCGTGACGAAAACTTCATGCTGGGAAAGGGGAACATATACCTGCCCTCTGTGCTGCTTTGAGTCCAGAGACTTGAACCTATTTCTTCATCATATGGACAGCTGTCACAAGGACTTTCATGCTCAACCAAACTTCTACTGCCTGTCTTGCAAGGTCTCAGCGGTGAAGTTTGAAGGTCTTGCTTTACATAACGCAAAATCACATCCTGAACTCCATACAGCGCACAAGAGAGTGTCCTTGCAAGTTACCAAACGAGATGGGGCTATTACAGTGGAGCAAAGCCTGTTTACAGAAGAGGATTTCAGTGAATCCGGAATATCCATTACCAAGACACCCATAATGAAAATGACCAAAGGGGGGCACAAAAAAATTGTCGTCTCCCATACTGTTGAGGTACATCGGGCTGAGCCTAGCATCGACAAACCCGCAACTGTAACCAATGGCACTTCAGTTAGGACCTTTCCCCTAACGACATCAACACATATCATTGGTGGCACTGGTGCCCCTCCAATCTATAAAATCCCAAACATCCCAAGAATGCATAACCGTGGTCCTCTGTGGAACTCTAATATGTCATCAGCCGATTCAAATGCTGATCTCCCAAAGGTCATGATCCCTCTAAGTAGCATCCCCACCTACGATCCAGCTATGGATTTAAGCAGCTTTCTTAAGACATCCTTTGGTAAGTTCCCTTACCCTACCAAAGCAGAGCTCTGTTACTTGACAGTGGTCTCTGGCTTCCCAGAGGAACAGATCAAACTCTGGTTCACAGCCCAAAGGCTAAAGCAAGGTATTAGCTGGTCTCCTGAAGAAATCGAGGACACACGTAGAAAGATGTTCAACACTGTATTCCAAGCCACACCGAAAACATCACAGAATCAGTTGCATCACAACATTTCCCAACACTGTGTTTCTGTCCAGTCTGCCACTTTGAGTTCTAACTATATACAACAGATACCAAAGGGAAGTGCAGTGGGTTGGAAAGGAGGGGTCATAGTCAGCCAGCCTAGCGTGACCCAGGCCACATCCCTTAAGCAGCAGCAGCCAGTGGTTCAGGCGCCACAGGTAAATATCCACCATGCTGTTATCACTAAGGAAACTGGAAATGAATTATCTTGTTGGACAACTGAGAACGGCAACAATGCAAGCCGAGGAGGTAGCGTTAGCAATCTTGGACACACTGGAAAAAGCGAGACTGGCTGCAGCTCATCCATCTTGCCTGGCGCTTCCAAAAGTCAGAACAGCAGTTATAGTGAGGGCAGCATCATGAATCTGACCAACATAGTCAGGAAAATTGACTGTCATGTCAATGACAGGAACGCAAATTGCACCAGCAAAACAAAAGCCAGTCCAACTTCCATTTATGGGCAACAGAAAGCGTCCAATAACACAAAAGAAAGCAGCTTTGCCACCACCAGCAAATATAACAACGGAAGCACTTATAAAAGCACCAGCCACATTTCTATTTGCACTAAAAGGGAGGGGAACATCTTAGACCACACCAGCAAAAGCAACACTGACACTAGTGTGATTTGTAGCAACAGTAACATAAGAACTGATGAGTTTTTACCACCCCTTACCCATACCCTGGTCCCACAGCCTggaagcatggatctatcctttGGTAAGAGTAAGGTTTTACCTGAGCTGCCAGGGACCCTGAAGCAAAGCTTTACTCATAACTCATTCCCTGAACAAAAACGCTTTCTTGCACCACAAGGTCAACCATACCACATACATACTTTGACAGACTCCCAGTCCGCTTTGGGGGGTTCATTTATCAACCTGCCCCAGAGCTCCCTCCAGTCTAACTCTGCACCAAGCTCCCATATCCAAGATGAACCCAGTCAACACTCCTCTCCACCCCTTTCTGCTCCTCAGGAGCAACATTCTCCAAAAACCCTACTGGGAGCACCTCAGGTCCAGTCCACAGACATTACTGCCGTCCACTACAAGGAACAGGACCCCAAACACTTACCTGCCTTAGACAAAGACTCTAAGCAATCAAGTTTTGATAAAGAAAGGTTCTACAGAAACGTAacgcaaaatgaaaatgaaggaaGAGTTTCTGAAACGGATAGTggaattacaaaaacattttacacCACTGACAAGAACGAGCATAGCAAAATAGTTAACACACTACATACCTTCACAAACGATAACACTAACAAGGCTAAACAAGCCATGCCGCTCTTAAGACAATACATACAAGAAGTGGACCAATGGGAAAGCAACTGCAACCATCTCGAAGAGTCAAACATGAGCCCAATGAAGATAAACGTAATATCGCTGAACAAAGATGAGAGTTTGTACAAGACCAACAGCAAACCGCCAATCTGCAAGCCGTTAGAGAGCTTGATCAGTGGCAACGATTCCAGTCATAAAGACGAATCTTCAGCATGGCATGAAAGCTTACGGCTTTTACCAGTGGATGCAGAACATCGCACAACTGATATAGGTAACAGCGAATCACACCAGCCAGATAAACTTGTAGGTCTTGAAACCCAACAAGTCAAGCGAGATCTATGCCCGGAGCGGAAGAGTATTTTTCAGAGTCTAGACTCTGAAGCTCCCATGCTGCCAATGaagaaaaaatcacaggaggCAATGGCGGAGTTAGACAAGTCAACCACAGGAGAACAAGATTACTGGGAGATTAAGGATGACGAGCATCAGCAACCAATGGGAAACCAGAGTTTGAGAGGGCATCAAGCACAAGACAGTCAATCAAGGGACTGTCTGAGAGGAGAGCTTCTGAAAGTTTAAGGACTTGGCTCCGCAAGCCGAAGAGGCAGAGGATCCCGTATTCATCCTGAACATTACATTTcttgttttctttacatatgaCAGCAGATGAGATTGTAAAACATTCGTGATGGTCAATGGACTTGTGGAGTTTTGGGCCGATCCAGAGAGTAGCCGCTACAAATGTAGATCCGATTCGATTTAGGTAAACTCTGTGTAGGAAACTATGATGTATATGCTTGAAACTGCACTATCGAGGGTGTACTGGACGTTAGGAATGTCAGTTAGATATTGTGATACTTTGTTATATGTCAGATAATCAGCACTTCTGCAATGCCTTGGGTTTTTACCGTTACCCGTTTTCATTTCTTCATGTCCAGATCAAACAAGTTCTCCATGgcgctttttcttttttttttttttggtttttccaCAAAGCATCGAGCAGTTAGCGACAAATCATGCACTATAACTCGCTTTAGTGGTGTCTGTCTGCACACACAACCCAATTGGCCAGACATTGCCTTAAACATCACCTTTCTATTTCTATGACTGGCTGCACAAACAAGCTTTTCAGCAACTGTGTTGATGTGTGTATAAATTGGGGATTTAAAATCCCAACAGAACTGCTGCTATATCTTcggaagtgttttgtttttttataagcaTTAACAAGACTATTATATGTGAAAAGCTTGCAAAAGAAATGTTAATTTATGGTGGAGAAAGTTTAAAACGGTTTGCTTATCCGATGGGGTATTACAGTTCTCACAGACAGTCAGATAAAGTGCTCTGCTAACTGGATATTCCCTGTGTTTGAGTTGGGCtacgatatatatatatctatatatatagtatatctacacacacacacacacattatgcatCATTTATATGCTGCTAAGTTCAGACCATCCAAAGTGAATAACAGGTGCTTTTCATCCCGTATTATTTGCATTTGTATCCAACGTggtttctctttaaaaaaaaaaaaaaaaaagttaacacaaAGATAACATCTGGACTTACAGTATTACCTTCCCGTCAGTTCCCATTGTGCAGGTCTGTCTAAAAGAACACAGTGCACTGGAGTGTTATCCTTTCTACACATTACAAATCTTTTGGTAATAAATGGAGAATGTCAGATTTA

Function

symbol description
si:ch211-232b12.5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; nervous system; and pharyngeal arch 3-7 skeleton. Orthologous to human ZHX3 (zinc fingers and homeoboxes 3).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031002-40 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; nervous system; and pharyngeal arch 3-7 skeleton. Orthologous to human ZHX3 (zinc fingers and homeoboxes 3).

Ensembl:

ensembl_id ENSDARG00000087186

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007920 True 4586 mRNA 0.44 3 25313810 25324534

Neighbor

gene id symbol gene type direction distance location
XLOC_004145 snai1a coding downstream 56215 25251495 ~ 25257595 (-)
XLOC_004143 myh7ba coding downstream 100121 25181886 ~ 25213689 (-)
XLOC_004144 dre-mir-499 coding downstream 108567 25205153 ~ 25205243 (-)
XLOC_004142 CR628365.2 coding downstream 345923 24967771 ~ 24967887 (-)
XLOC_004141 CR628365.1 coding downstream 493809 24819265 ~ 24820001 (-)
XLOC_004147 NA coding upstream 43578 25368112 ~ 25408896 (-)
XLOC_004148 gata1a coding upstream 87380 25411914 ~ 25418856 (-)
XLOC_004149 hcfc1a coding upstream 111906 25436440 ~ 25461336 (-)
XLOC_004150 NA coding upstream 150771 25475305 ~ 25476980 (-)
XLOC_004151 si:dkey-245f22.3 coding upstream 204023 25528557 ~ 25539323 (-)
XLOC_004063 CR854846.1 misc downstream 9186132 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 12622119 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 12692043 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 12722514 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 12800548 12512966 ~ 12513262 (-)
XLOC_004140 NA non-coding downstream 599517 24709784 ~ 24714293 (-)
XLOC_004131 CR354444.1 non-coding downstream 1412449 23900000 ~ 23901361 (-)
XLOC_004152 CR933820.1 non-coding upstream 345305 25669839 ~ 25669955 (-)
XLOC_004165 CR847934.1 non-coding upstream 1423758 26748292 ~ 26748429 (-)
XLOC_004167 NA non-coding upstream 2177671 27502205 ~ 27507973 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_03006241_03009198 NA coding CI01000306 null 3006190 ~ 3009356 (-)