XLOC_004149 (hcfc1a)


Basic Information

Item Value
gene id XLOC_004149
gene name hcfc1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25436440 ~ 25461336 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007925
ACGAATTTGGGTGATTCTGGCCAACCATTTcaaaaacagaccatcaaaacaCTTCCCTGGATACCGCGACACGAATCTCtaaaaggACATGACGTCCCCCGGTGTGCCTGGAACCACCGGAGCTCCGCTGCAGCCGCGATGGAAGCGGGTTCTTGGTTGGTCTGGTCCGGTACCTCGACCCAGACACGGGCACCGAGCCGTAGCCATCAAGGAACTGATGGTCGTTTTCGGCGGAGGAAACGAAGGAATCGTTGACGAGCTGCACGTTTATAACACTGCAACAAATCAGTGGTTCATACCAGCCGTTCGTGGGGACATCCCTCCAGGCTGTGCGGCTTATGGTTTTGTGTGTGATGGTACACGTCTGCTAGTTTTTGGTGGAATGGTCGAATATGGAAAATACAGCAATGACCTTTATGAGTTACAGGCAAGCAGGTGGGAATGGAAAAAATTGAAGCCAAAAGCCCCTAAGAATGGAGTGCCACCATGTCCTCGTCTGGGCCACAGTTTTTCTCTTGTGGGCAACAAGTGTTATCTTTTTGGAGGGCTTGCCAATGACAGTGAAGACCCCAAGAACAACATTCCCAGATATTTGAATGATCTTTATACCCTCGAGTTGCGTCCGGGGTCCAGCGTTGCGGGGTGGGATGTACCAGTCACGTATGGAGTATTGCCACCTCCAAGAGAGAGCCACACTGCTGTAATCTATACCGAAAAAGTTACTAAGAAGTCCCGTCTTGTTATATACGGAGGAATGAGTGGCTGTCGTTTGGGTGATCTTTGGACATTAGATATTGATACACTGACCTGGAATAAGCCTGCAATAAGCGGTGCTGCTCCCCTCCCCCGAAGCCTGCACTCGGCCACCACTATTACAAACAAAATGTATGTTTTTGGTGGCTGGGTTCCTTTGGTGATGGATGACGTGAAGGTGGCCACACATGAGAAGGAATGGAAGTGTACAAACACACTGGCATGCCTGAACCTAGACACTTTAGCATGGGAGACTGTTTTGATGGACACTTTGGAGGATAACATCCCACGTGCTCGAGCAGGACATTGTGCTGTCGCTATTAACAACAGACTTTATATCTGGAGTGGACGTGATGGGTATCGCAAAGCTTGGAACAATCAGGTGTGCTGCAAAGACCTGTGGTACCTGGAGACAGaaCGACCCAACCCTCCTTCAAGGGTGCAGCTTGTCCGAGCCAACACAAATTCTTTGGAGGTTAGCTGGGGAGCAGTTTCTACAGCAGACACGTACCTGCTTCAGCTCCAGAAATATGATATCCCAGCAGCCACTGCTGCCACATCACCAGCTCTCAATGCAGCTCCCTCCCTCCCAGGAAACTCTCCTAAGAGTCCAGCACCGGCTGCAGCTGCTCCATCTGCTCAGAGTCTGCCGCATAGTGGCATCACCTCAGTGCCCCAGGCTGCTTCCCCCACAGCCTCAGTCTTACCTGGCACACCTGCAAGTCCTCTGGCTGCATCAATGGCACGTGGCCCAGCTATTCTAAAAGTTGCAGCCCCTCAGTCAGGAACAGGAGCATCGATTGTCACCGTACGCCAAGCGTCGCAGGTTGGAAAATCCCCAGTCACTGTGGCATCACTTCCCGCTGGTGTTCGCATGGTAGTGCCATCACAGACCGCTCAAGGAACGCCCATCGGCAGCAGCCCTCAGATGAGCGGAATGGCAGCTTTGGCTGCAGCTGCAGCAGCCACACAGAAGATCCCTCCATCCCCAGGAGCCACTGTTCTCAACATGCCAGCCGGGGCCACAATTGTCAAAACGGTAGCTGTGACTCCAGGAGCCTCCACACTCCCCACCACCGTTAAAGTGGCATCGCCTCTGATGGTAAGCAACCCGGCCACTCGCATGCTGAAGACCGCTGCTGCCCAGGTGGCCACCCCAACAGTGTCCAGTCCCACTACAGGTGCTCGGCCTATCATCACGGTGCACAAATCGGGCACAGTTACCGTAGCCCAACAGGCTCAGGTTGTGACCACTGTGGTTGGTGGTGTCACTAAAACCATCACTCTTGTTAAGAGCCCACTTTCCATGGGAGGCAACTTGaTATCCAACTTGGGCAAGGTAGTGTCAGTGGTACAAAACAAACCAGTGCAGTCAGCCACTGTGACTGGACAGGCCTCCAATCCACTCACACAGATTATACAGACAAAGGGTCCCCTTCCACCAGGCACCATTCTAAAGCTGGTAACATCTGCAGATGGAAAACCAACCACCATAATTACTACCAGTCAAGCAGGTGGCACAGGCAACAAGCCCACTATTTTGGGCATCAGTGGCATGTCCCCCACTTCCACCAGCAAACCAGGCACCACCACTATCATTAAAACAATCCCTATGTCTGCTGTTCAGCAAGGAGCTGCAGGTGTGACAAGTACTACAGGAGTAAAAAGTCCCATTACCATCATCACCACAAAGGTCATGACCTCTGGAACTCCTGGTAAAATCATTACAGCAATGCCTAAGATTGGTACTGCGGCAGGCCAACAGGGCCTAACACAGGTTGTCCTAAAAGGAGCTCCTGGTCAGCCGGGCACTATTCTCCGCACTGTGCCGATGGGAGGAGTACGTCTTGTGTCTCCAGTATCTGGGGTCAAGCCAACTGTAACCACCCTGGTTGTCAAAGGAACAACTGGTGTAACAACTCTTGGCACAGTCACAGGAACAGTTTCATCAAGCTTAGCTGGAGGGAGCCTAGCCAGTGCCAACGCCACCCTGGCAACCCCCATCACAACTCTGGGCACGATCGCCACCCTCGCCAGCCAGGTCATTAATGCCACCAATGTGACGGCTGCTCAAAGCAACCTGACCACTGTTACCTCCACCATGCAGCCCACTCAGGTGACCCTCATAACTACGCCTAGTGGAGTGGAGGCTCAGCCTGGCCAAGATCTGCCTGTTTCATTTCTAGCATCTCCCACCTCTGAGCAGCCCACTTCTACTGAATCTGGCACAGGAGAGGCTTCTGGCAGCGTTACTCTCGTATGCTCCAATCCACCTTGTGAGACGCATGAGACGGGCACCACTAACACGGCCACCACAGCGACCTCAAACATGGGCGCTGGACCAGCTGGCACAGTACAGAGAGTCTGCTCAAACCCGCCATGTGAAACACATGAAACGGGTACAACAAACACTGCCACAACAGCATCTGCCAACATGGGCGCTGTTCAAAGGGTCTGCTCAAACCCACCATGCGAAACCCACGAAACGGGCACCACCAGCACGACAACCACAGCATCTTCAAATATGGGCACTGCTCCTGCTGGGACAGTGCAGAGGGTTTGCTCAAACCCACCCTGTGAAACACACGAGACAGGCACCACAAACACAGCAACTACGGCTTCATCAAACATgggtggaaaccagcctggagCAGTGCAAAGGGTCTGTTCAAACCCACCTTGTGAGACCCATGAGACTGGCACCACCAACACGGCAACCACGGCTTCATCAAGCATGGGTGGAGGACAAGAGGGAACAGTGCAAAGAGTTTGCTCAAACCCGCCATGTGAAACACATGAGACAGGCACCACCAACACAGCAACCACATCATCATCCAATATGGGTGGAGATCAAGCTGGAGCAGTGCAAAGGGTCTGCTCAAACCCACCCTGTGAAACCCACGAGACTGGCACCACCAACACAGCCACCACTGCTACCTGCAATATGGAGACAGATGAAGGAACAGCCCAACAGACCAGTGAAGCATCCGAATCGAGCACGAGCACGAGCACGGAGAGCCTGCCGGCGACTGCAGCTGCCCAGAGAGGAGCTATTACTACAGTCACACAAGCCACACCGCTGCCAGGACCTGCTGTTCCATCTATTTCTTCAATCACGGAGTCGTCCTCAGAGGCAGGAGCTGAGCCGGTGGTGATGGAGAGTTCAGAGGCAGAGTCTTTACAGACCGAAGGCCAGGCTGAAGCAGAGGCCGTTGCCATGCAGGCAGAGTTTCAGACAGAGGCAGGAGCTGTTGCTTTACCCACTGACTTCCAGGAGGATGCAGCCGCCTTGCCAGCTGATTTCCAGGGAGAAGCGGTTGCGGTGGCCATGCAGGCGGAGAGCCAGGCGGACGCAGTGCCCATGGAGCAAGATGTTTCTGGCATGGCAGAGGGAGAAGCCGCTCAGGAACAGCTGCCAACGGCAGAGATGGAAGATGTAGATGCAGCGTCAGCATCACAGGCTGCCGTGCTGGCTTTGCCACCAGAGCTGATGGCGGATGGTCAGTCCACTACGCTGATGGTGACAGGTCTGACCCCAGAAGAGCTGGCTGTCACTGCAGCTGCAGAGGCAGCGGCACAAGCAGCAGCCACAGAGGAGGCTCAGGCCCTTGCCATCCAGGCCGTACTACAAGCAGCACAGCAGGCCGTCATGAGTGATGCGGGAGGAGACGACCAGCAGACCCACACCATACCCATCGTTCTGACCCAGCAGGAGCTCGCAGCTTTggttcagcagcagcagcagctccagGCAGCACAACAGCAGGCTGCAGCTCAGGCTGCTCTGCCCACCGAGGGCCTGGCACCAGCCGACAGCCTCAATGATCCCTTATCTGAAAGCAACGGGCACAACGAAATGGCAGCCGCTGCCACAAGTGCAGTAGTCACACTGCTGCCTCGCACTGCCGCAGAAACCTTGGCTCCATCCAGCACATTAGCACCTGTAGTAGTAGCCAGTCCAGCGAAGATGCAGGCAGCGGCGGCTCTCACTGAAGTGGCCAATGGCATTGAGGCTGGGAAACAAAATCCTCCAACAGTTACTGTCAAACCTCAAGTGAAGAAAGAGAACCAGTGGTTTGATGTTGGCATTGTTAAAGTGACCAATACGGTGGTAACTCATTTCTACATGCCCGCAGACGACTCTGCTTATGTTGAGAATGATTCTGGCACAGCCCCAGACTACAGTCAGATGAAGAGGGTGGAGCTTCAGCCTGGCACCGCCTACAAGTTCCGTGTGGCGGGTATAAATACTTGTGGCCGAGGAACcttttctgaaatatctgcatttAAGACATGTTTACCAGGCTTCCCCGGAGCACCATGTGCCATAAAGATCAGCAAGAGTCCAGATGGTGCTCATTTGACATGGGAGCCTCCGTCCGTGACATCAGGAAAGATCACAGAGTACTCTGTGTATTTGGCCATCCAGAGCAGTCAGACCACCGAAGCCAAGCCCTCAGCCCCGGCTCAGCTGGCCTTCATGCGGGTTTACTGTGGACCAAACCCCTCGTGCCTGGTCCAGTCCTCCAGCCTGTCCAACGCTCACATTGACTACACCACCAAACCCGCCATCATCTTCCGCATCGCCGCTCGCAACGAAAAGGGCTATGGCCCTGCCACACAAGTGCGATGGCTGCAAGAGTCTAGCAAAGATGGCCTTTCTGCAAAACCTGCCCCGAAAAGAGCAGTTTCTTCACCAGATACGAAAGGGATTGGTCAGAAGAAAGCAAGAATGGACCAGTAACCTGTCCTCTGCATTTAGCCTCCAAAACCATACAGACTTTAACTACTCCCACTGCTCCATCCGGATTTAACCCATCTCTGACTGTAACCCTTCATCAAAACAGCACAAAAAAGAGGAAATCCAGTTTCTAGCTTTTTATTAATAGTATGAATGGAGAAAAGCACATTGCGAGTATTTTTCAACATACTTGGAGCGGGagaggaaaacaaaaacaagcttTTTCCATTGTAGTGTCTTCCTTTCTGCTCTCCCCACATTTCTTTCATGTATTTTTGCCTCAGTAATTCAAAAGCAGTTTTAAGATATTTGTAACGTTTTTTTCTGTCAGCTGGTTtctatgaagtttttttttttttttttttgcaatggacTTCTGAGTGAAGTTTGAGTTCATGTTTAATATGTGAGATGAGTGATAATGGgagacagaaaacaaacaaacatgcagaaATGGGGAAAACAAAGCAAGCACTTGTCCTCAGACAAGAGGGGATATTTTTCAGATGTGCGTGAGGATTGGTTCTGGATTCTGTGCACTTTGGCATTGAGCAGAAACAAAAGCTGAACTGCGGATAAAGAAACGGCCATGGAAGAAAGAACATTACCAGCAGAGACTTTGCTAGAACTGTTTgccatacaaacaaacaaaaaagtaaacaaaacaaaaaaagagaaaaaaaagaaaaacttcccAAAAAATTAGCGAGCGACGATGGAGAACTTGTgtagtttatttttgtattttaaagcttttctcctgtgtgtatgtgtatgtccgTGTGCTTTTTTTAACTcactacttttattttatttttttgttttaatagttcTTGGCCATTCCCATTGGTTTAAGGATTTGTGGCAAGAAGGGCTTTTGAAGACGAGGAAATGCATTGTGTTTGTGCTCAAGCCGAGTGTTGATGTGAAAAAGATGTAAACAAGTATAAACATCTGAAGGGCTTTTACTTTGTTTACGGCGTGTGTCCACTCCGTGTTTGTGTATGCCAAACCTCGAGATGTAAAAAtcgttaattttattttatttttgttcttgattCTTCACTTTACAAATTCGTCACTTATTATTAGTAAACACTTTCCCCTTCCTCTGCCTCGTCCTCTAAACTTTTTCACAAGATAACTTTGTAGAAATTTTCTCTGCTCTAGTTTGTGAAGGAAGTTGTCCACGTGAAGATGAAtttcttcccttttttttttttgagtatctGAAAGGTATGCAGAGTAAATGTTCAGTGTATACCTGTGTGTCTCCATGTGGCGAGAATGGCTTGTCATTTTTGATGATAAGAGCCAAGTTCGGATTGGGTTGTAATATAGTTCATTCATACTGCAGGAATTGAAGATGATAACCTGGCCTTTTATATATTTACCTGTACAACGTTTTTACATGTTGGTCATCTCCTGATTGCCTTTTTTGTCTTGACTTATAAAAGAAACAGAAATATC

Function

symbol description
hcfc1a Predicted to enable transcription coactivator activity. Predicted to be involved in chromatin remodeling and regulation of transcription, DNA-templated. Predicted to be part of histone methyltransferase complex. Human ortholog(s) of this gene implicated in methylmalonic acidemia and homocysteinemia cblX type. Orthologous to human HCFC1 (host cell factor C1).

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048188 Set1C/COMPASS complex cellular_component
GO:0071339 MLL1 complex cellular_component
GO:0035097 histone methyltransferase complex cellular_component
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030912-10 Predicted to enable transcription coactivator activity. Predicted to be involved in chromatin remodeling and regulation of transcription, DNA-templated. Predicted to be part of histone methyltransferase complex. Human ortholog(s) of this gene implicated in methylmalonic acidemia and homocysteinemia cblX type. Orthologous to human HCFC1 (host cell factor C1).

Ensembl:

ensembl_id ENSDARG00000015990

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007925 True 6964 mRNA 0.50 28 25436440 25461336

Neighbor

gene id symbol gene type direction distance location
XLOC_004148 gata1a coding downstream 17584 25411914 ~ 25418856 (-)
XLOC_004147 NA coding downstream 27544 25368112 ~ 25408896 (-)
XLOC_004146 si:ch211-232b12.5 coding downstream 111906 25313810 ~ 25324534 (-)
XLOC_004145 snai1a coding downstream 178845 25251495 ~ 25257595 (-)
XLOC_004143 myh7ba coding downstream 222751 25181886 ~ 25213689 (-)
XLOC_004150 NA coding upstream 13969 25475305 ~ 25476980 (-)
XLOC_004151 si:dkey-245f22.3 coding upstream 67221 25528557 ~ 25539323 (-)
XLOC_004152 CR933820.1 coding upstream 208503 25669839 ~ 25669955 (-)
XLOC_004153 brpf3a coding upstream 251436 25712772 ~ 25734417 (-)
XLOC_004154 plch2b coding upstream 290862 25752198 ~ 25777318 (-)
XLOC_004063 CR854846.1 misc downstream 9308762 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 12744749 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 12814673 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 12845144 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 12923178 12512966 ~ 12513262 (-)
XLOC_004144 dre-mir-499 non-coding downstream 231197 25205153 ~ 25205243 (-)
XLOC_004142 CR628365.2 non-coding downstream 468553 24967771 ~ 24967887 (-)
XLOC_004141 CR628365.1 non-coding downstream 616439 24819265 ~ 24820001 (-)
XLOC_004140 NA non-coding downstream 722147 24709784 ~ 24714293 (-)
XLOC_004165 CR847934.1 non-coding upstream 1286956 26748292 ~ 26748429 (-)
XLOC_004167 NA non-coding upstream 2040869 27502205 ~ 27507973 (-)
XLOC_004169 NA non-coding upstream 2082242 27543578 ~ 27625465 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_03086600_03106758 HCFC1B, HCFC1A, HCFC1 coding CI01000306 null 3086510 ~ 3108215 (-)