Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_004148 |
| gene name | gata1a |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 25411914 ~ 25418856 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| gata1a | Enables DNA-binding transcription factor activity; double-stranded DNA binding activity; and sequence-specific DNA binding activity. Acts upstream of or within several processes, including hemopoiesis; regulation of gene expression; and regulation of myeloid cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including ball; hematopoietic cell; hematopoietic system; mesoderm; and vasculature. Human ortholog(s) of this gene implicated in several diseases, including Down syndrome; X-linked recessive disease (multiple); bone marrow cancer (multiple); colon adenocarcinoma; and myeloid leukemia associated with Down Syndrome. Orthologous to human GATA1 (GATA binding protein 1). |
| id | name | namespace |
|---|---|---|
| GO:0030099 | myeloid cell differentiation | biological_process |
| GO:0048738 | cardiac muscle tissue development | biological_process |
| GO:0010629 | negative regulation of gene expression | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043009 | chordate embryonic development | biological_process |
| GO:0045165 | cell fate commitment | biological_process |
| GO:0048821 | erythrocyte development | biological_process |
| GO:0043066 | negative regulation of apoptotic process | biological_process |
| GO:0030218 | erythrocyte differentiation | biological_process |
| GO:0030223 | neutrophil differentiation | biological_process |
| GO:0030224 | monocyte differentiation | biological_process |
| GO:0030225 | macrophage differentiation | biological_process |
| GO:0060215 | primitive hemopoiesis | biological_process |
| GO:0045637 | regulation of myeloid cell differentiation | biological_process |
| GO:0035162 | embryonic hemopoiesis | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0005515 | protein binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-268 | Enables DNA-binding transcription factor activity; double-stranded DNA binding activity; and sequence-specific DNA binding activity. Acts upstream of or within several processes, including hemopoiesis; regulation of gene expression; and regulation of myeloid cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including ball; hematopoietic cell; hematopoietic system; mesoderm; and vasculature. Human ortholog(s) of this gene implicated in several diseases, including Down syndrome; X-linked recessive disease (multiple); bone marrow cancer (multiple); colon adenocarcinoma; and myeloid leukemia associated with Down Syndrome. Orthologous to human GATA1 (GATA binding protein 1). |
| ensembl_id | ENSDARG00000013477 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00007923 | False | 1657 | mRNA | 0.48 | 6 | 25411914 | 25418856 |
| TCONS_00007924 | True | 730 | lncRNA | 0.41 | 2 | 25412343 | 25413153 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_004147 | NA | coding | downstream | 3018 | 25368112 ~ 25408896 (-) |
| XLOC_004146 | si:ch211-232b12.5 | coding | downstream | 87380 | 25313810 ~ 25324534 (-) |
| XLOC_004145 | snai1a | coding | downstream | 154319 | 25251495 ~ 25257595 (-) |
| XLOC_004143 | myh7ba | coding | downstream | 198225 | 25181886 ~ 25213689 (-) |
| XLOC_004144 | dre-mir-499 | coding | downstream | 206671 | 25205153 ~ 25205243 (-) |
| XLOC_004149 | hcfc1a | coding | upstream | 17584 | 25436440 ~ 25461336 (-) |
| XLOC_004150 | NA | coding | upstream | 56449 | 25475305 ~ 25476980 (-) |
| XLOC_004151 | si:dkey-245f22.3 | coding | upstream | 109701 | 25528557 ~ 25539323 (-) |
| XLOC_004152 | CR933820.1 | coding | upstream | 250983 | 25669839 ~ 25669955 (-) |
| XLOC_004153 | brpf3a | coding | upstream | 293916 | 25712772 ~ 25734417 (-) |
| XLOC_004063 | CR854846.1 | misc | downstream | 9284236 | 16127382 ~ 16127678 (-) |
| XLOC_004019 | CR450764.8 | misc | downstream | 12720223 | 12691395 ~ 12691691 (-) |
| XLOC_004015 | CR450764.4 | misc | downstream | 12790147 | 12621518 ~ 12621767 (-) |
| XLOC_004013 | CABZ01022569.1 | misc | downstream | 12820618 | 12590999 ~ 12591296 (-) |
| XLOC_004008 | BX000700.19 | misc | downstream | 12898652 | 12512966 ~ 12513262 (-) |
| XLOC_004142 | CR628365.2 | non-coding | downstream | 444027 | 24967771 ~ 24967887 (-) |
| XLOC_004141 | CR628365.1 | non-coding | downstream | 591913 | 24819265 ~ 24820001 (-) |
| XLOC_004140 | NA | non-coding | downstream | 697621 | 24709784 ~ 24714293 (-) |
| XLOC_004165 | CR847934.1 | non-coding | upstream | 1329436 | 26748292 ~ 26748429 (-) |
| XLOC_004167 | NA | non-coding | upstream | 2083349 | 27502205 ~ 27507973 (-) |
| XLOC_004169 | NA | non-coding | upstream | 2124722 | 27543578 ~ 27625465 (-) |
