RNA id: TCONS_00007924


Basic Information

Item Value
RNA id TCONS_00007924
length 730
lncRNA type retained_intron
GC content 0.41
exon number 2
gene id XLOC_004148
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25411914 ~ 25418856 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACATCGATGTtgcaatgtcattaaaatacattcagttaaatagactttggcattcatttagttgctcaagcgcaaaacaagacaaaatgccgtttactcgcacgcacccatcagaatcggcaggctagcacagaagctccactgaatatactggggtaaaataaatgctcatattataaagacatggtggggaaaaatgtaatttaatgcggtgcttcttgtacaatctgagaccagCTTTATAttagatatcactcagccagtggagatggctgatttttaaagaaaacagaccttaaacgatTTTGCAATGGCATTTAGTTCACCAGAAGCGTTTAATCtgtggcaaattaaaagtcctgttAGCATACtttggcatataccccattggttATAATGAACtaaataattatacaaaaaattgtCTCCTGCATCAGATTGTCAGCAAACGTGCTGGAACGCAGTGCGCCAACTGCCACACTAGTACTACAACACTATGGAGACGCAATGCCAGCGGCGAGCCTGTGTGCAACGCCTGCGGCCTTTATTTTAAACTACACAATGTCAACAGGCCTTTGACAATGAAGAAGGATGGCATACAAACTCGAAACCGCAAGGTTTCAAACAGAAACAAGAAGGGCAAAAAGAATGCAGCTTCAGAAGTTTATCCTGACATGTCTCACATGGCACCTCCAGATGAGCATGTAGGAGCGTATTCTCTGAACCCA

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0010629 negative regulation of gene expression biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043009 chordate embryonic development biological_process
GO:0045165 cell fate commitment biological_process
GO:0048821 erythrocyte development biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0030224 monocyte differentiation biological_process
GO:0030225 macrophage differentiation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0045637 regulation of myeloid cell differentiation biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-268 Enables DNA-binding transcription factor activity; double-stranded DNA binding activity; and sequence-specific DNA binding activity. Acts upstream of or within several processes, including hemopoiesis; regulation of gene expression; and regulation of myeloid cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including ball; hematopoietic cell; hematopoietic system; mesoderm; and vasculature. Human ortholog(s) of this gene implicated in several diseases, including Down syndrome; X-linked recessive disease (multiple); bone marrow cancer (multiple); colon adenocarcinoma; and myeloid leukemia associated with Down Syndrome. Orthologous to human GATA1 (GATA binding protein 1).

Ensembl:

ensembl_id ENSDART00000143727

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007921 lncRNA downstream 3447 25368112 ~ 25408896 (-) False XLOC_004147
TCONS_00008796 lncRNA downstream 8660 25368112 ~ 25403683 (-) False XLOC_004147
TCONS_00007917 lncRNA downstream 199079 25209734 ~ 25213264 (-) True XLOC_004143
TCONS_00007912 lncRNA downstream 592342 24819265 ~ 24820001 (-) True XLOC_004141
TCONS_00008472 lncRNA downstream 698050 24712969 ~ 24714293 (-) True XLOC_004140
TCONS_00008797 lncRNA upstream 62152 25475305 ~ 25476582 (-) False XLOC_004150
TCONS_00008798 lncRNA upstream 62152 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA upstream 62152 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008799 lncRNA upstream 1206281 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00007965 lncRNA upstream 2089052 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007922 mRNA downstream 28130 25382602 ~ 25384213 (-) True XLOC_004147
TCONS_00007920 mRNA downstream 87809 25313810 ~ 25324534 (-) True XLOC_004146
TCONS_00007919 mRNA downstream 154748 25252466 ~ 25257595 (-) True XLOC_004145
TCONS_00007918 mRNA downstream 155298 25251495 ~ 25257045 (-) False XLOC_004145
TCONS_00007914 mRNA downstream 198654 25181886 ~ 25213689 (-) False XLOC_004143
TCONS_00007925 mRNA upstream 23287 25436440 ~ 25461336 (-) True XLOC_004149
TCONS_00007929 mRNA upstream 115895 25529048 ~ 25538341 (-) False XLOC_004151
TCONS_00007930 mRNA upstream 115927 25529080 ~ 25539323 (-) True XLOC_004151
TCONS_00007932 mRNA upstream 299619 25712772 ~ 25733910 (-) False XLOC_004153
TCONS_00007933 mRNA upstream 300942 25714095 ~ 25734417 (-) False XLOC_004153
TCONS_00007916 other downstream 207100 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007913 other downstream 444456 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007910 other downstream 879385 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007888 other downstream 1756865 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007873 other downstream 2253036 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007927 other upstream 62946 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007928 other upstream 115404 25528557 ~ 25532480 (-) False XLOC_004151
TCONS_00007931 other upstream 256686 25669839 ~ 25669955 (-) True XLOC_004152
TCONS_00007940 other upstream 444788 25857941 ~ 25931082 (-) False XLOC_004157
TCONS_00007943 other upstream 606946 26020099 ~ 26180714 (-) True XLOC_004157

Expression Profile

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