RNA id: TCONS_00007912


Basic Information

Item Value
RNA id TCONS_00007912
length 737
lncRNA type antisense
GC content 0.44
exon number 1
gene id XLOC_004141
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24819265 ~ 24820001 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATGGACTCTTTCAAGTTACCCACTCGGAAGTAACAGATGTTGTTCAGGGACGACGAATTTTGTCGCTCTCCATCCTATCGACAGCTACATTCTCAAATTTACCGCTGGCACGAGCTCACACCGTTCAAACAGCGCATCAAACCCGTCTGAATGTGTAACCCGTGGGCATTTGCATCGTCACATGACCCGATTTCGGAATGCAGGATCCATCAGCGGAAAATGACATATTGTGCCAAGACAGAAAGTATCTCACCGTACTGGCGTCGCGCTCGACTTTTGTCTTTACATATCTCGGTGCAGAGGGTTCATCAGCATCCACCGTCGTATTCCATGCGAGCAATATCTACGAGCACGTACCACACGTCAACTCGGAACTGTCGCCCCCTATAACAGGACAGCGATCCCCGGTGCCCTGATCCGCCTCCCGCAGGAAGCAGTCCGAGCAAAGGCACTGAGGTGTGGCAGCGCTAGTCTGACCTGTTAGCGACAGTATCGACgacatttaacaaaattaataaagCATGTTTTTGCTTATTTGACTTCAAAACATTTGACCGCATGTGCTGAATTGTTTCCATTGAGTCGCTTTAATGTGTTAATGTCAGCATGAATCTATAGCATGCTAATAGTTTTAATTCAAACCAAAACATCACTCAGGGTTATTAATAAGTTTagcatatatttttgttattctttttatattgattttaaataaaatcttatttaaCCTCGTCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:1902531 regulation of intracellular signal transduction biological_process
GO:1902533 positive regulation of intracellular signal transduction biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154828

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008472 lncRNA downstream 104972 24712969 ~ 24714293 (-) True XLOC_004140
TCONS_00008795 lncRNA downstream 104990 24711119 ~ 24714275 (-) False XLOC_004140
TCONS_00008471 lncRNA downstream 106343 24711804 ~ 24712922 (-) False XLOC_004140
TCONS_00008470 lncRNA downstream 106714 24709784 ~ 24712551 (-) False XLOC_004140
TCONS_00008469 lncRNA downstream 107042 24709784 ~ 24712223 (-) False XLOC_004140
TCONS_00007917 lncRNA upstream 389733 25209734 ~ 25213264 (-) True XLOC_004143
TCONS_00008796 lncRNA upstream 548111 25368112 ~ 25403683 (-) False XLOC_004147
TCONS_00007921 lncRNA upstream 548111 25368112 ~ 25408896 (-) False XLOC_004147
TCONS_00007924 lncRNA upstream 592342 25412343 ~ 25413153 (-) True XLOC_004148
TCONS_00008797 lncRNA upstream 655304 25475305 ~ 25476582 (-) False XLOC_004150
TCONS_00007911 mRNA downstream 137973 24671676 ~ 24681292 (-) True XLOC_004139
TCONS_00007907 mRNA downstream 280405 24464356 ~ 24538860 (-) False XLOC_004138
TCONS_00007908 mRNA downstream 280413 24465292 ~ 24538852 (-) False XLOC_004138
TCONS_00007906 mRNA downstream 286277 24464356 ~ 24532988 (-) False XLOC_004138
TCONS_00007914 mRNA upstream 361885 25181886 ~ 25213689 (-) False XLOC_004143
TCONS_00007915 mRNA upstream 362812 25182813 ~ 25213651 (-) False XLOC_004143
TCONS_00007918 mRNA upstream 431494 25251495 ~ 25257045 (-) False XLOC_004145
TCONS_00007919 mRNA upstream 432465 25252466 ~ 25257595 (-) True XLOC_004145
TCONS_00007920 mRNA upstream 493809 25313810 ~ 25324534 (-) True XLOC_004146
TCONS_00007910 other downstream 286307 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007888 other downstream 1163787 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007873 other downstream 1659958 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007863 other downstream 2219710 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 3066676 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007913 other upstream 147770 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 385152 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007927 other upstream 656098 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007928 other upstream 708556 25528557 ~ 25532480 (-) False XLOC_004151
TCONS_00007931 other upstream 849838 25669839 ~ 25669955 (-) True XLOC_004152

Expression Profile

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