RNA id: TCONS_00008795


Basic Information

Item Value
RNA id TCONS_00008795
length 3157
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id XLOC_004140
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24709784 ~ 24714293 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAATATTGTGCTTAACTGTTTACACAATGACTgtgttaaacacatttaaacagtaTGTTGGAATACAATGCATTTTTGCCTGTAGTCAAATGGCACTGTGTTATGAgtttatgtagtttatttatcatgatggtaatataaaataagcatttgTGAGTATGTGGCTAAAAATTCTATATTTCGGGGTTTATACTGTGAATTTCTGCACGCGCATGCGCAGTGACGTTCTTTTTCAACTGACGCTCTCCCAGAGCTCTATCGGATAACGCACCTCTCTGCCTCAGGTGAGTGAAATTCATTAAAATTCGTCTACGATAGTAAATATTTCTTCCACTCTGCGTGagaatgttttgtgtttgttgtccaagaagttatttttgttacttttattatgttttcatgTTTCGTACTCCTGATACACGGGACTTGGCAACTCTGTCATGTAACATTAACTTTAGCCGCGCAAGCTAACGCATCTGGCGCGTCTTTTGTAAAGCTGCGTTGGCACTTGGCAGAATTGTTAATAATAAGTTACATATAAGGCGAAAGACTTACCCTAAATATGTACTGCATTTTGGTGTAAGAGTTGCCGTCACTTTAAAAAGCCTCTGCGTCTCTGACACTCGAGGTAACGCTACCAGATATAATTTATGCATTTAACGTTACGTTATTATCATAAGGTTATTTAATATATAACCTTATATGAAGCTCTGCGGCAGGAATTTAAACATAAATCCCTTGTCGTAACGTTAGTTGGGTGCTTTGTACAGACACCAATTGGCGCCGAGGTGTGAGCAAATTCATAAACAATAGCTAAAATATGAAGATCTTTAATGTACTCAATTTTGCGCGCCATTTTGTGGTACCCTACTAGTCGCATACTAtttaaaagtgtactttttaTTGTCATACACAGTTACAGGTGTTTGTTTTCTCATTGTGCTGTATGAATTTCTCTCTTAGGAGATGGAAGTCGAGGAACAAATTACAGTCACTCTTAACACTTCTACACCGCGTTCTTGCAACTGTCTTCATAGACAGAAAGGAAATATGGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACAGGTCTCAACTATCTTTTGATTGAATATTGAAATTTGACAGATTTTCAAGTTCATTGACACTGATGTAAATGCAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAATACCCCGGACTCATTAGAAAGAAGTGTGCACTCATTACAggtaaaacatttatatatttctccctttatattactatagataaacgtaaacatttaaataaataaaatgttttggcaTTTCTTAGTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTGTGAGTATGTGGTTTGTTTATTTCATGTAAGATGTATTTatttgcaaattaaataaattacatttatttaaataagttatatattaaaataaattctacatttaaaaaatatttcaaataaatacatttaacaatttaTGCCAATCAATTCTGAAGTACCACTGTTTAGTCAATTTTTTGTTTGTCAATGTTTGTGTATAAGCAATTTAtgcaactgtatttttttttttacttttttagctATCCTTCTGGTATAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTCAGGTGCCCTTTGGTGAAAATGAGGGACATGAGAATGTaagaatgtttttaaattataaactgaATTTATTAGGAATGTGTATATAAGTTGCTCATTTATTTGACTTTCATTagttctgtttttacattactaatctcaggaggatttttttttttttttgctaggccATCACACAGTCGGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAAGTGAGTTGTTGTCTCTGATAAAGAAGATGCGACCAGACAATTTATCATCAATAAAGACTGCAATCAATCAAAACTTCAGTTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttggtaatagacatgctcaaCTAAGACAGAACTTTAcacagacatttatttcataattgtaatattaatatttctttgtttctgatttctttctttctttaaagaTGGACATTGAATTTTCCAAGCTCACAGATAGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAAAATTGACATCAGACTCTTACTGAAGATGGCTGACAATCAGCATGATGGTATGAGTTTCAGCCAAAATATCTGTTGCATGTGCACACTTttctaaaaatagtttaaaagatAAAACTTAATGTGAATATTAATATTCTATTAAAGATATTAATttctaatatattttgtttaaattcttATTTTGCATGTGACCTGTATCTTCACTTCAAGATGAGCTGTTAAACTGTTAAAGATCCTTATTCATCTTCTTCCACCCACTGCCTCTGGGAGAAGTGTTGCTGGGAGTAAATGCTGTGTGACTTCTGCTGTGTCCTACCTGTTGGAGCAATTGCCGGTATAGTTTTTATTGGTTTAGcttatgataaataaaatgtttctaatgcagcaacaTTTTCTTATGCTTTTTATTGTTTCATTCCTGAAGGCTGGTACCACCGTTACATCTTTGCTCACTGAATCCATGAAAGGGACCCTGAAGTCAGCTCAGCCGCAGTTGGTTTCTATTGGTTGTCTAGGACATGGATCCTTGTACGTGTACGTGTACTTGTAGCTGTGGCAAAGAATGACTCTTTTGCTCTTTCACTCGATCCTGAAAGCCTGACCTGTGCTGTAGACAGACTTTTCAAATTCTTCTGGCTGTGCAATCTTCAGTATTCATGCCAActgtcttctgtttttttttttttttgagtatatatatatatatat

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0006413 translational initiation biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007896 lncRNA downstream 694324 24016063 ~ 24016795 (-) True XLOC_004132
TCONS_00007894 lncRNA downstream 694734 24015236 ~ 24016385 (-) False XLOC_004132
TCONS_00007889 lncRNA downstream 809758 23900000 ~ 23901361 (-) False XLOC_004131
TCONS_00007890 lncRNA downstream 809774 23900409 ~ 23901345 (-) True XLOC_004131
TCONS_00008794 lncRNA downstream 1185508 23498265 ~ 23525611 (-) True XLOC_004128
TCONS_00007912 lncRNA upstream 104990 24819265 ~ 24820001 (-) True XLOC_004141
TCONS_00007917 lncRNA upstream 495459 25209734 ~ 25213264 (-) True XLOC_004143
TCONS_00008796 lncRNA upstream 653837 25368112 ~ 25403683 (-) False XLOC_004147
TCONS_00007921 lncRNA upstream 653837 25368112 ~ 25408896 (-) False XLOC_004147
TCONS_00007924 lncRNA upstream 698068 25412343 ~ 25413153 (-) True XLOC_004148
TCONS_00007911 mRNA downstream 29827 24671676 ~ 24681292 (-) True XLOC_004139
TCONS_00007907 mRNA downstream 172259 24464356 ~ 24538860 (-) False XLOC_004138
TCONS_00007908 mRNA downstream 172267 24465292 ~ 24538852 (-) False XLOC_004138
TCONS_00007906 mRNA downstream 178131 24464356 ~ 24532988 (-) False XLOC_004138
TCONS_00007914 mRNA upstream 467611 25181886 ~ 25213689 (-) False XLOC_004143
TCONS_00007915 mRNA upstream 468538 25182813 ~ 25213651 (-) False XLOC_004143
TCONS_00007918 mRNA upstream 537220 25251495 ~ 25257045 (-) False XLOC_004145
TCONS_00007919 mRNA upstream 538191 25252466 ~ 25257595 (-) True XLOC_004145
TCONS_00007920 mRNA upstream 599535 25313810 ~ 25324534 (-) True XLOC_004146
TCONS_00007910 other downstream 178161 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007888 other downstream 1055641 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007873 other downstream 1551812 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007863 other downstream 2111564 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 2958530 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007913 other upstream 253496 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 490878 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007927 other upstream 761824 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007928 other upstream 814282 25528557 ~ 25532480 (-) False XLOC_004151
TCONS_00007931 other upstream 955564 25669839 ~ 25669955 (-) True XLOC_004152

Expression Profile

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