RNA id: TCONS_00007877


Basic Information

Item Value
RNA id TCONS_00007877
length 1622
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_004126
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 23311452 ~ 23322182 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctttttatatacattttattcttaCGCATGTGAACAGAATAGCACAGCAGTAAAGGTTAGAGGCTGATTTATGATGCTTTTGATAGCTTAAATTCTCTttgaagtgtgcatgtgtgtgggcCACGTGTGAGTTCATAAGTCTGAAAAACTGGATGAATACCACTGAATCTTGTGATCAAATAAGCAAAACTAAAAAGTGTTAATGATTCAAAAgacttttcatatttttaatcattttttattttcatttgttcttTTCTTTCAGAACTCTTCTCTTTCtgaaacacattaaaatgatgcTGCTTACTGTCATATTGATGTTGTCAGTGGCGAGGGTACACACAAACCCCTCTGGGCATTTTCAGTATTACTTAGAAGatgaaactccagaggaaacatCACTCCGGGTCCTCAGGGGAACAGACACTCGTCCCACAGATGGATCTCCTCCATCTAAACTCTCAGCGCTCTTCTCCATGGGTGCAGGTCCTCAGAAAAACACATGGTGGTGGTCTCCAGAAAGTCCTTACACCAAGAGGAGACAGAATGTAGCTTACTACAATCTCAACTCCTTCGGCCTCCGCTATGGCAAGAGAGAACAGGACATGCTCACACGATTGAAACAGAAAAGTCCTGTAAAGTGAAGGACCAATAATGTTCTTTGGTGTTTTATCATTTACGTAAAtacatgttttctgtttttatttctgttattttgttgggtgtaattagtttCATTTGGGTGTTTAGGTAGgggatatgtttttttttgtgtattatttttctgTTGGTCCTCTCTGAGGTATTTGCCTTCATGTTTTAGgtgttaaaaagaaagaaaaatacaagaaaaaagacaaataaacggACCTTACTCTAAGGGTTCGtaaaagtgtatttatttgtCCAGTGTTCTTTTATGTTACGTCCTTGATCCAAGACCAGGGCCGTAACAGTGATTATTAAATATGTGATGCCAGAAATAATATGGTTCTGATCTGTGGACGGACCATTAGTAGAATGTTGCTAGTCTAGCAGTTCATAAATTTCATTACAAAAGAGTTTTAGTTTCATTTCTCGGAGCTGATTGGTCAACAGCGTACTTATTCACCCATCACTCACTTTATATCATTATGGCACACTTTCAGCAAGAACCATGGGCCTATTTCAGTAGgattactgtttattatttaatcaagGAAGAATGCGTGACCCCTGCTGGTTTATTATTGCTTTATTCACCTTTAGTTTTGAGACCCCGCCCTTGACAAAACCTTTATTGGTGTGAAGGAAGCAATAAGTTTGGCGGGAATATTTACTTATTAACGCTTGACCCCACCTGAAGAACATCAAGACAAGATATGTACGAGGTCAGCCATTTAAACGATGAGAAATAgttaaaataacatataatataaatatgcagtaCATCTGGCCACCCCTATAATGCTCCGTACAACTGTGCATGTATGATCGTCATCGGCAGACGATGTGGGAAAATGTTCAGTCAGATCAAGAGCACCGATAGAAACCGTGTTCACACAAGACACTTTTTATGTAAAATAGATGTTATATCCTGTCACTATTTGTTTCATAAATAGGTTGTGTTTGAGAATCACAC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0019228 neuronal action potential biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:1903365 regulation of fear response biological_process
GO:0043005 neuron projection cellular_component
GO:0031773 kisspeptin receptor binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04929 GnRH secretion

ZFIN:

id description
ZDB-GENE-080128-1 Enables G protein-coupled receptor binding activity. Acts upstream of or within neuronal action potential and regulation of fear response. Predicted to be active in neuron projection. Is expressed in several structures, including brain; fat cell; liver; male organism; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 13 with or without anosmia. Orthologous to human KISS1 (KiSS-1 metastasis suppressor).

Ensembl:

ensembl_id ENSDART00000182394

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007876 lncRNA downstream 2134 23305755 ~ 23309318 (-) False XLOC_004125
TCONS_00007875 lncRNA downstream 2134 23305755 ~ 23309318 (-) True XLOC_004125
TCONS_00007872 lncRNA downstream 230492 22993020 ~ 23080960 (-) True XLOC_004122
TCONS_00008468 lncRNA downstream 399339 22909764 ~ 22912113 (-) True XLOC_004121
TCONS_00008467 lncRNA downstream 405552 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00008793 lncRNA upstream 184023 23498265 ~ 23501763 (-) False XLOC_004128
TCONS_00008794 lncRNA upstream 184023 23498265 ~ 23525611 (-) True XLOC_004128
TCONS_00007889 lncRNA upstream 585758 23900000 ~ 23901361 (-) False XLOC_004131
TCONS_00007890 lncRNA upstream 586167 23900409 ~ 23901345 (-) True XLOC_004131
TCONS_00007894 lncRNA upstream 700994 24015236 ~ 24016385 (-) False XLOC_004132
TCONS_00007874 mRNA downstream 92085 23205889 ~ 23219367 (-) True XLOC_004124
TCONS_00007866 mRNA downstream 230482 22920587 ~ 23080970 (-) False XLOC_004122
TCONS_00007867 mRNA downstream 285503 22922985 ~ 23025949 (-) False XLOC_004122
TCONS_00007869 mRNA downstream 285503 22926943 ~ 23025949 (-) False XLOC_004122
TCONS_00007868 mRNA downstream 285503 22926943 ~ 23025949 (-) False XLOC_004122
TCONS_00007879 mRNA upstream 13542 23327784 ~ 23332592 (-) True XLOC_004127
TCONS_00007880 mRNA upstream 28754 23342996 ~ 23458792 (-) False XLOC_004128
TCONS_00007882 mRNA upstream 33316 23347558 ~ 23459779 (-) False XLOC_004128
TCONS_00007881 mRNA upstream 33316 23347558 ~ 23459779 (-) False XLOC_004128
TCONS_00007883 mRNA upstream 33316 23347558 ~ 23501467 (-) False XLOC_004128
TCONS_00007873 other downstream 152145 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007863 other downstream 711897 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 1558863 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 1726291 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007815 other downstream 3895137 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007888 other upstream 341108 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007910 other upstream 1211434 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007913 other upstream 1653529 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 1890911 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007927 other upstream 2161857 25476099 ~ 25476185 (-) True XLOC_004150

Expression Profile

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