RNA id: TCONS_00007885


Basic Information

Item Value
RNA id TCONS_00007885
length 539
RNA type mRNA
GC content 0.51
exon number 6
gene id XLOC_004128
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 23342996 ~ 23525611 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGGAAACGCATCGCCAGATTTTTCTCAGCCTCAACAACTTCAGAAAAGTCAAAATGACCCTAATGGAACTGTTGGACACCAGCAAGTGATCCAGACACACCTGGAAGAAAACGGACCTTTGAAAGCCTTGCTGAGCTCTGATTTGGAAATGAATGGCAAGGCGGGTGGAAGGGGACCTGTAAATAAAGCCAGCGAAGCAAACAGCAACGGCAACAATCTCAGCATGGTTTCTGAAGTACCGCCGGATGGTCAGAACCACACACGGGGCACGCGCACACCCAAAAGAGCCGCCACATTTGGGAAACGCTCTAACTCGATGAGACGCAACCCCAACGCGGAGGTGAGCCGGCAGGGCTGGCTATACAAACAGGCAAGCAGTGGTGTGAAGCAGTGGAACAAGCGCTGGTTTGTGCTGACAGATCGATGTCTTTTCTACTATAAAGACGAAAAGGAAGAAGGAGTCTTGGGAAGCCTTCCTCTTCTCAGCTTCAAGATTGGACCTGTCCAAACATCGGACAGCATCACCCGCAAGTTTGC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-14 Orthologous to human PLEKHA6 (pleckstrin homology domain containing A6).

Ensembl:

ensembl_id ENSDART00000159221

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007876 lncRNA downstream 94494 23305755 ~ 23309318 (-) False XLOC_004125
TCONS_00007875 lncRNA downstream 94494 23305755 ~ 23309318 (-) True XLOC_004125
TCONS_00007872 lncRNA downstream 322852 22993020 ~ 23080960 (-) True XLOC_004122
TCONS_00008468 lncRNA downstream 491699 22909764 ~ 22912113 (-) True XLOC_004121
TCONS_00008467 lncRNA downstream 497912 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00008793 lncRNA upstream 18399 23498265 ~ 23501763 (-) False XLOC_004128
TCONS_00008794 lncRNA upstream 18399 23498265 ~ 23525611 (-) True XLOC_004128
TCONS_00007889 lncRNA upstream 420134 23900000 ~ 23901361 (-) False XLOC_004131
TCONS_00007890 lncRNA upstream 420543 23900409 ~ 23901345 (-) True XLOC_004131
TCONS_00007894 lncRNA upstream 535370 24015236 ~ 24016385 (-) False XLOC_004132
TCONS_00007879 mRNA downstream 71220 23327784 ~ 23332592 (-) True XLOC_004127
TCONS_00007878 mRNA downstream 81630 23312176 ~ 23322182 (-) True XLOC_004126
TCONS_00007877 mRNA downstream 89570 23311452 ~ 23314242 (-) False XLOC_004126
TCONS_00007874 mRNA downstream 184445 23205889 ~ 23219367 (-) True XLOC_004124
TCONS_00007871 mRNA downstream 406306 22983510 ~ 22997506 (-) False XLOC_004122
TCONS_00007886 mRNA upstream 113971 23593837 ~ 23687158 (-) False XLOC_004129
TCONS_00007887 mRNA upstream 113971 23593837 ~ 23697217 (-) True XLOC_004129
TCONS_00007891 mRNA upstream 533903 24013769 ~ 24016813 (-) False XLOC_004132
TCONS_00007892 mRNA upstream 533995 24013861 ~ 24016798 (-) False XLOC_004132
TCONS_00007893 mRNA upstream 534275 24014141 ~ 24015845 (-) False XLOC_004132
TCONS_00007873 other downstream 244505 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007863 other downstream 804257 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 1651223 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 1818651 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007815 other downstream 3987497 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007888 other upstream 175484 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007910 other upstream 1045810 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007913 other upstream 1487905 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 1725287 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007927 other upstream 1996233 25476099 ~ 25476185 (-) True XLOC_004150

Expression Profile

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